View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_high_13 (Length: 445)
Name: NF11008_high_13
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 3810250 - 3810646
Alignment:
| Q |
18 |
aatagaagatgtagggaagacaattttcattcaacaagacaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagat |
117 |
Q |
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| T |
3810250 |
aatagaagatgtagggaagacaattttcattcaacaagagaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagat |
3810349 |
T |
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| Q |
118 |
gggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtctttacagcagaaag |
217 |
Q |
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| T |
3810350 |
gggtttgac-------------------ctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtatttacagcagaaag |
3810430 |
T |
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| Q |
218 |
aatcaatgaagtcaattgatgatcttattcatgcagttcagaaagcatttgatgaatattcatgtgtacaatccgataaaaaattttatactctacaaac |
317 |
Q |
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| T |
3810431 |
aatcaatgaagtcaattgatgatcttattcatgcagttcagaaagcattcgatgaatattcatgtgtacaatccgataaaaaaatttatactctacaaac |
3810530 |
T |
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| Q |
318 |
atgcatggttgaaataatgaagaataagggatcaaacaggtacaaaactcctcacaagaagaaagatatgctatataaccaagatgggatacctactcaa |
417 |
Q |
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| T |
3810531 |
atgcatggttgaaataatgaagaataagggatcaaacaggtacaaaactcctcacaagaagaaagatatgctatataaccaagatgggatacctactcaa |
3810630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
113 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
200 |
Q |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
| Q |
94 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
182 |
Q |
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| T |
45489216 |
ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
113 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
200 |
Q |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
| Q |
94 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
170 |
Q |
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| T |
8187133 |
ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 40286990 - 40286926
Alignment:
| Q |
124 |
gacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggcttttt |
188 |
Q |
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| T |
40286990 |
gacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggcttttt |
40286926 |
T |
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