View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_high_23 (Length: 367)
Name: NF11008_high_23
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 33249875 - 33249527
Alignment:
| Q |
1 |
agtaccagagctcaatttattcgatagtactatctttctttctgaattttccatttggagcggctgtgtacaatgttagttagagttcaaacatagaagg |
100 |
Q |
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| T |
33249875 |
agtaccagagctcaatttattcgatagtactatctttctttctgaattttccatttggagcggctgtgtacaatgttagttagagttcaaacatagaagg |
33249776 |
T |
|
| Q |
101 |
tgagatgtctacaatgtttatgcatacttttttatttcttagttttaccgatgtaggcgttttttagttgtacccaacgatctgtaaatgggaaatagtt |
200 |
Q |
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| T |
33249775 |
tgagatgtctacaatgtttatgcatacttttttatttcttagttttaccgatgtaggcgttttttagttgtacccaacgatctgtaaatgggaaatagtt |
33249676 |
T |
|
| Q |
201 |
ttcctagtaatgggaatatcaaatttggaagtaatcttatcatgaatttcaatagaagagaggaaaagtctagtggacatagggagtgttggcaagtgaa |
300 |
Q |
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| T |
33249675 |
ttcctagtaatgggaatatcaaatttggaagtaatcttatcatgaatttcaatagaagagaggaaaagtctagtggacatagggagtgttggcaagtgaa |
33249576 |
T |
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| Q |
301 |
atacatcattgaaagctcttttgttagtctcctcttaaatagagaattt |
349 |
Q |
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| T |
33249575 |
atacatcattgaaagctcttttgttaatctcctcttaaatagagaattt |
33249527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 33243090 - 33243029
Alignment:
| Q |
185 |
taaatgggaaatagttttcctagtaatgggaatatcaaatttggaagtaatcttatcatgaa |
246 |
Q |
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||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |||||| |
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| T |
33243090 |
taaatgggaaatagttttcctagaaatgggaatatagaagttggaagtaatcttaccatgaa |
33243029 |
T |
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