View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_high_28 (Length: 348)
Name: NF11008_high_28
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_high_28 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 17620256 - 17620586
Alignment:
| Q |
18 |
gagttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17620256 |
gagttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtttctgttggggctaaagaatggagaaattgg |
17620355 |
T |
|
| Q |
118 |
aatgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctattgctttggtgatggaaaatggaaaagactctgaggagatgagatcaagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17620356 |
aatgagtttgggagtgaggttgtgaaaagggaagaaattgaaaaggctattgctttagtgatggaaaatggaaaagaatctgaggagatgagatcaagat |
17620455 |
T |
|
| Q |
218 |
ccaaagctttgagtgaggatgcaaagaaagctatacttgttggtgggtcttctcatgaaaatttgatgcaactcattcatgagcttaagtcactcaaact |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |
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| T |
17620456 |
ccaaagctttgagtgaggatgcaaagaaagctatacttgttggtgggtcttctcatgccaatttgatgcaactaattcatgagcttaagtcgctcaaaca |
17620555 |
T |
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| Q |
318 |
tcaaagactaaatggtgttttattaggccaa |
348 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
17620556 |
tcaaagactaaatggtgttttattaggccaa |
17620586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 17572459 - 17572157
Alignment:
| Q |
21 |
ttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattggaat |
120 |
Q |
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|||||||||||||||||| || ||||||||||||||| | || |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
17572459 |
ttggcctttgtttgctgaacatttttttaatgagaagttggttgttgatgtgttgagaattggggtatctgttggggccaaagaatggagaaattggaat |
17572360 |
T |
|
| Q |
121 |
gagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctattgctttggtgatggaaaatggaaaagactctgaggagatgagatcaagagcca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| |
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| T |
17572359 |
gagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctattgctttggttttggaaaatggaaaagaagctgatgagatgagatcaagagcca |
17572260 |
T |
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| Q |
221 |
aagctttgagtgaggatgcaaagaaagctatacttgttggtgggtcttctcatgaaaatttgatgcaactcattcatgagcttaagtcactcaaacttca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17572259 |
aagctttgagtgaggatgcaaagaaagctatacttgttggtgggtcttctcatgaaaatttgatgcaactaattcatgagcttaagtcactcaaacttca |
17572160 |
T |
|
| Q |
321 |
aag |
323 |
Q |
| |
|
||| |
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| T |
17572159 |
aag |
17572157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 5994847 - 5994701
Alignment:
| Q |
22 |
tggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattggaatg |
121 |
Q |
| |
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|||||||| |||||||| || ||||| |||||||| || | |||||||||||| |||||| || |||| || |||||||||||||| |||||||||| |
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| T |
5994847 |
tggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtgggagctaaagaatggaggaattggaatg |
5994748 |
T |
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| Q |
122 |
agtttgggagtgaggttgtgaaaagggaagaaattggaaaggctatt |
168 |
Q |
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||||||||||||||||||||||||||||||| ||||| || |||||| |
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| T |
5994747 |
agtttgggagtgaggttgtgaaaagggaagatattgggaatgctatt |
5994701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 243 - 323
Target Start/End: Original strand, 17602236 - 17602316
Alignment:
| Q |
243 |
gaaagctatacttgttggtgggtcttctcatgaaaatttgatgcaactcattcatgagcttaagtcactcaaacttcaaag |
323 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
17602236 |
gaaagctataattgttggtgggtcttctcatgccaatttgatgcaactaattcatgagcttaagtcgctcaaacttcaaag |
17602316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 14710059 - 14709754
Alignment:
| Q |
18 |
gagttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattgg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14710059 |
gagttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattgg |
14709960 |
T |
|
| Q |
118 |
aatgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctattgctttggtgatggaaaatggaaaagactctgaggagatgagatcaagag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
14709959 |
aatgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctattgctttggtgatggaaaatggaaaagaatctgaggagatgagattaagag |
14709860 |
T |
|
| Q |
218 |
ccaaagctttgagtgaggatgcaaagaaagctatacttgttggtgggtcttctcatgaaaatttgatgcaactcattcatgagcttaagtcactcaaact |
317 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14709859 |
ccaaagctttgagtgagaatgcaaagaaagctatacttgttggtgggtcttctcatgccaatttgatgcaactcattcatgagcttaagtcactcaaact |
14709760 |
T |
|
| Q |
318 |
tcaaag |
323 |
Q |
| |
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|||||| |
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| T |
14709759 |
tcaaag |
14709754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 14721955 - 14721865
Alignment:
| Q |
243 |
gaaagctatacttgttggtgggtcttctcatgaaaatttgatgcaactcattcatgagcttaagtcactcaaacttcaaagactaaatggt |
333 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || |||||| |
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| T |
14721955 |
gaaagctataattgttggtgggtcttctcatgccaatttgatgcaactaattcatgagcttaagtcgctcaaacttcaaaggcttaatggt |
14721865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 12613771 - 12614076
Alignment:
| Q |
21 |
ttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattggaat |
120 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||||||| | | |||| ||||| | |||||||||||| | ||| || |||||||| |||||||||| |
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| T |
12613771 |
ttggcctttatttgctgaacaattttttcatgagaaattggtggttgaagtgttaaaaattggggtgtcactagggattagagaatggaaaaattggaat |
12613870 |
T |
|
| Q |
121 |
gagtttgggagtgagg---ttgtgaaaagggaagaaattggaaaggctattgctttggtgatggaaaatggaaaagactctgaggagatgagatcaagag |
217 |
Q |
| |
|
||||||| | | ||| ||||||||||||| || |||| ||||||||||| |||||||||| |||| ||||||| |||||||||||||| ||||| |
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| T |
12613871 |
gagtttgatactaaggacattgtgaaaagggatgatattgcaaaggctattggtttggtgatgacaaatagaaaagaagttgaggagatgagattaagag |
12613970 |
T |
|
| Q |
218 |
ccaaagctttgagtgaggatgcaaagaaagctatacttgttggtgggtcttctcatgaaaatttgatgcaactcattcatgagcttaagtcactcaaact |
317 |
Q |
| |
|
| ||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| ||| | ||| | ||||||||||||||||||| |
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| T |
12613971 |
ctaaaaatttgagtgatgatggaaagaaagctatacttgttggtgggtcttctcatgccaatttgatacaaataattgaggagcttaagtcactcaaaca |
12614070 |
T |
|
| Q |
318 |
tcaaag |
323 |
Q |
| |
|
|||||| |
|
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| T |
12614071 |
tcaaag |
12614076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 159 - 315
Target Start/End: Original strand, 14236709 - 14236865
Alignment:
| Q |
159 |
aaaggctattgctttggtgatggaaaatggaaaagactctgaggagatgagatcaagagccaaagctttgagtgaggatgcaaagaaagctatacttgtt |
258 |
Q |
| |
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||||||||||| ||||||||||| |||||||||| | || | |||||||||| ||||| |||||||||||||| ||| | ||||||||||||||||| |
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| T |
14236709 |
aaaggctattggtttggtgatggcaaatggaaaataagctaatgagatgagatttagagctaaagctttgagtgataatggagagaaagctatacttgtt |
14236808 |
T |
|
| Q |
259 |
ggtgggtcttctcatgaaaatttgatgcaactcattcatgagcttaagtcactcaaa |
315 |
Q |
| |
|
|| ||||||||||||| |||||||| ||| | ||| | |||||||||||||||||| |
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|
| T |
14236809 |
ggagggtcttctcatgccaatttgatacaaataattgaggagcttaagtcactcaaa |
14236865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 16908601 - 16908458
Alignment:
| Q |
21 |
ttggcctttgtttgctgatcaattttttaatgagaagattatta-ttgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattggaa |
119 |
Q |
| |
|
|||||| ||||||||||| || ||||| ||||||| |||| || |||||||||||| ||||| ||| | ||||| || |||||||||||||||||||| |
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| T |
16908601 |
ttggccattgtttgctgaacagtttttcaatgaga-gattgttggttgatgtgttgaagattggtgtggcagttggagcaaaagaatggagaaattggaa |
16908503 |
T |
|
| Q |
120 |
tgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggc |
164 |
Q |
| |
|
|||||||||| ||| || ||||| ||||| || || |||||||| |
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|
| T |
16908502 |
tgagtttggggatgatgtggtgaagagggaggatataggaaaggc |
16908458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 53894656 - 53894579
Alignment:
| Q |
186 |
tggaaaagactctgaggagatgagatcaagagccaaagctttgagtgaggatgcaaagaaagctatacttgttggtgg |
263 |
Q |
| |
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||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
53894656 |
tggaaaagaagccgaggagatgagatcatgagccaaagctttgagtgatgatgcaaagaaacctatacttgttggtgg |
53894579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 14870058 - 14870166
Alignment:
| Q |
21 |
ttggcctttgtttgctgatcaattttttaatgagaagattatta-ttgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattggaa |
119 |
Q |
| |
|
|||||| ||||||||||| || ||||| ||||||| |||| || |||||||||||| ||||| ||| | ||||| || || ||||||||||| ||||| |
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| T |
14870058 |
ttggccattgtttgctgaacagtttttcaatgaga-gattgttggttgatgtgttgaagattggtgtggcagttggagcaaaggaatggagaaactggaa |
14870156 |
T |
|
| Q |
120 |
tgagtttggg |
129 |
Q |
| |
|
|||||||||| |
|
|
| T |
14870157 |
tgagtttggg |
14870166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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