View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_high_31 (Length: 344)
Name: NF11008_high_31
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 43538240 - 43538044
Alignment:
| Q |
12 |
atcaaatggtccaaatttacaattgattaaacgagtcaaagacatttttattagaacaacaactagcaacataagaataataaaaaagataaatcacaag |
111 |
Q |
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| T |
43538240 |
atcaaatggtccaaattttcaattgattaaacgagtcaaagacatttttattagaacaacaactagcaacataagaataataaaaaagataaatcacaag |
43538141 |
T |
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| Q |
112 |
acaatgaacacaatcgtttacgattgatttggaaacaattatagttctatattattgcttgagtgattagtttaaagtgttacaaatcatatatata |
208 |
Q |
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| T |
43538140 |
acaatgaacacaatcgtttacgattgatttggaaacaattatagttctatattattacttgagtgattaatttacagtgttacaagtcatatatata |
43538044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 43538036 - 43537965
Alignment:
| Q |
263 |
atgaaagaaaaggagcaaatgtcacgacgctcgctcaactctctcgctccttaccgatcttttgtgcctatg |
334 |
Q |
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| T |
43538036 |
atgaaagaataggagcaaatgtcacgacggtcgctcaactctctcgccccttaccgatcttttgtgcctatg |
43537965 |
T |
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