View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_high_36 (Length: 312)
Name: NF11008_high_36
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 43292094 - 43291810
Alignment:
| Q |
17 |
gtttcaaatgaatgaaaaccccgagtaagagtttcaaaccagcagctgttgtggtgtacaaagaataaatttatgcaggtcatgaaactattatcagtta |
116 |
Q |
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| T |
43292094 |
gtttcaaatgaatgaaaaccccgagtaagagtttcaaaccagcagctgttgtggtgtacaaagaataaatttatgcaggtcatgaaactattatcagtta |
43291995 |
T |
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| Q |
117 |
taatagatcctgtgaggctgtgactatcttaacgatgagcctagctcactttcgtgacaactgtctactacaaagaaaccaacaaatctcgaaataactt |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43291994 |
taatagatcttgtgaggctgtgactatcttaacgatgagcctagctcactttcgtgacaactgtctactacaaagaaaccaacacatctcgaaataactt |
43291895 |
T |
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| Q |
217 |
gtgataattattcaattcattcattcgaatccaaaatcatatttaaatttaagctatcttggggcttataccctgcatacttcat |
301 |
Q |
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| T |
43291894 |
gtgataattattcaattcattcatccgaatccaaaatcgtatttaaatttaagctatattgtggcttataccctgcatacttcat |
43291810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 43308868 - 43308831
Alignment:
| Q |
215 |
ttgtgataattattcaattcattcattcgaatccaaaa |
252 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
43308868 |
ttgtgataattattcaattcattcatcagaatccaaaa |
43308831 |
T |
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