View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11008_high_4 (Length: 590)
Name: NF11008_high_4
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 10378575 - 10379146
Alignment:
| Q |
1 |
aaatgcctccatgcgtacacttatgccacatttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10378575 |
aaatgcctccatgcgtacacttatgccacatttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctcca |
10378674 |
T |
|
| Q |
101 |
ccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactcagactcaaaaactgatttttgacccaaattgtaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10378675 |
ccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactcagactcaaaaactgatttttgacccaaattgtaaga |
10378774 |
T |
|
| Q |
201 |
aaaacaacccaaaaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagccatcaacaactgaaccatccaaaatcaactacactaaggaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10378775 |
aaaacaacccaaaaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagccatcaacaactgaaccatccaaaatcaactacactaaggaa |
10378874 |
T |
|
| Q |
301 |
tgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10378875 |
tgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttg |
10378974 |
T |
|
| Q |
401 |
cttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgtttggtgctctcat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10378975 |
cttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgtttggtgctctcat |
10379074 |
T |
|
| Q |
501 |
acaacccttttctgatttagattatcatgttaacatgatacatgcacttgatctctgttgtgtcaatggcat |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10379075 |
acaacccttttctgatttagattatcatgttaacatgatacatgcacttgatctctgttgtgtcaatggcat |
10379146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 288 - 451
Target Start/End: Original strand, 10367337 - 10367500
Alignment:
| Q |
288 |
ctacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaag |
387 |
Q |
| |
|
|||||| |||||||| ||||||||| |||| | | |||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||| |
|
|
| T |
10367337 |
ctacacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
10367436 |
T |
|
| Q |
388 |
aatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataa |
451 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
10367437 |
aatgttaggcttgtttgcaagaattggagttccttccttaccactgagagaatccttcaaataa |
10367500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 31 - 276
Target Start/End: Original strand, 31329213 - 31329456
Alignment:
| Q |
31 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
130 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
|
|
| T |
31329213 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31329311 |
T |
|
| Q |
131 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata |
227 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
31329312 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata |
31329409 |
T |
|
| Q |
228 |
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacca |
276 |
Q |
| |
|
||| ||||||| | |||||||||||| ||||||| |||||||||||| |
|
|
| T |
31329410 |
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacca |
31329456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 31 - 276
Target Start/End: Original strand, 31335934 - 31336177
Alignment:
| Q |
31 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
130 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
|
|
| T |
31335934 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31336032 |
T |
|
| Q |
131 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata |
227 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
31336033 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata |
31336130 |
T |
|
| Q |
228 |
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacca |
276 |
Q |
| |
|
||| ||||||| | |||||||||||| ||||||| |||||||||||| |
|
|
| T |
31336131 |
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacca |
31336177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 43657570 - 43657687
Alignment:
| Q |
305 |
ttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttg |
404 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| ||||||||| |||||||| || || || ||| ||||||||| | |||| |||||||| || |
|
|
| T |
43657570 |
ttgaagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtg |
43657669 |
T |
|
| Q |
405 |
caagaattggagttcctt |
422 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
43657670 |
caaaaaatggagttcctt |
43657687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University