View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11008_high_48 (Length: 250)

Name: NF11008_high_48
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11008_high_48
NF11008_high_48
[»] chr2 (7 HSPs)
chr2 (1-119)||(39347426-39347544)
chr2 (157-242)||(5054607-5054692)
chr2 (158-229)||(27490731-27490803)
chr2 (159-214)||(35589402-35589459)
chr2 (160-242)||(28245728-28245812)
chr2 (161-242)||(26206848-26206931)
chr2 (160-227)||(44287443-44287511)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-84)||(2688-2773)
[»] chr8 (4 HSPs)
chr8 (158-242)||(6991795-6991881)
chr8 (163-242)||(9549186-9549267)
chr8 (160-242)||(34718115-34718199)
chr8 (160-227)||(32501199-32501267)
[»] chr6 (6 HSPs)
chr6 (158-229)||(17551379-17551452)
chr6 (158-211)||(30423613-30423668)
chr6 (158-242)||(2075438-2075524)
chr6 (155-229)||(22079564-22079639)
chr6 (160-214)||(35213576-35213632)
chr6 (158-227)||(5327594-5327665)
[»] chr3 (9 HSPs)
chr3 (159-242)||(8821629-8821714)
chr3 (158-242)||(32767674-32767760)
chr3 (158-227)||(41443193-41443264)
chr3 (160-229)||(6178426-6178496)
chr3 (159-242)||(44677471-44677556)
chr3 (160-214)||(22371191-22371247)
chr3 (159-226)||(46852135-46852203)
chr3 (158-227)||(49417573-49417644)
chr3 (158-227)||(54773756-54773827)
[»] chr4 (10 HSPs)
chr4 (159-227)||(45082980-45083049)
chr4 (157-214)||(32696178-32696237)
chr4 (155-227)||(14443193-14443267)
chr4 (155-214)||(51255741-51255802)
chr4 (159-213)||(12595647-12595703)
chr4 (157-226)||(14010121-14010192)
chr4 (159-227)||(26910202-26910270)
chr4 (159-242)||(28458364-28458450)
chr4 (156-227)||(37297045-37297117)
chr4 (156-227)||(50890076-50890148)
[»] chr1 (7 HSPs)
chr1 (160-242)||(21486304-21486388)
chr1 (159-227)||(46172409-46172478)
chr1 (158-242)||(52362480-52362566)
chr1 (155-214)||(10890061-10890122)
chr1 (157-214)||(15083066-15083124)
chr1 (159-242)||(47214207-47214292)
chr1 (159-229)||(9566961-9567033)
[»] chr7 (6 HSPs)
chr7 (158-226)||(13162917-13162987)
chr7 (159-214)||(22195145-22195202)
chr7 (157-214)||(12007201-12007260)
chr7 (157-242)||(13729723-13729810)
chr7 (155-214)||(15325653-15325713)
chr7 (157-214)||(37352107-37352166)
[»] chr5 (5 HSPs)
chr5 (157-214)||(18660756-18660814)
chr5 (160-229)||(39591683-39591750)
chr5 (160-242)||(35098992-35099076)
chr5 (155-212)||(14780438-14780497)
chr5 (159-242)||(20770129-20770215)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39347544 - 39347426
Alignment:
Q  1 aataaaagaataatagttttctttctgttttatttggtgtaattggatttaattcatgctttatatgatatagtaaagtgatttggatttgaatatttac 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  39347544 aataaaagaataatagctttctttctgttttatttggtgtaattggatttaattcatgctttatatgctatagtaaagtgatttggattcgaatatttac 39347445  T
Q  101 ttttattattagtgttatt 119  Q
    ||||||||||||| |||||    
T  39347444 ttttattattagttttatt 39347426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 5054607 - 5054692
Alignment:
Q  157 taagagaaatgatatttgaacatcttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    ||||||||||||||||||||||| |||||| | | ||||||| | || ||| ||||||  ||||| |||||||||||||| |||||    
T  5054607 taagagaaatgatatttgaacatttttttttataacttttgtgacaactttttctctcatactcacattatgtgttactttatctc 5054692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 27490803 - 27490731
Alignment:
Q  158 aagagaaatgatatttgaacatct-tttttgacagcttttgtaataattttctctctcgcactcatattatgt 229  Q
    ||||||||||||||||||||| |  ||||||||| ||||||| | || |||||||||| ||||||||||||||    
T  27490803 aagagaaatgatatttgaacaaccatttttgacaacttttgtgacaactttctctctcacactcatattatgt 27490731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 35589459 - 35589402
Alignment:
Q  159 agagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctc 214  Q
    ||||||||||||||||||||||  |||| ||||| |||||| || |||||||||||||    
T  35589459 agagaaatgatatttgaacatccattttgtgacaacttttgcaacaattttctctctc 35589402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 28245728 - 28245812
Alignment:
Q  160 gagaaatgatatttgaacatctttttt--gacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    |||||||||||||||||||||| ||||  |||| ||||||| | || ||||||||||  ||||| ||||| | |||||| |||||    
T  28245728 gagaaatgatatttgaacatctattttgcgacaacttttgtgacaactttctctctcatactcacattattttttactttatctc 28245812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 26206848 - 26206931
Alignment:
Q  161 agaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    ||||||||||||||||||||  |||| |||||  |||||| |||| ||||||||||  ||||| ||||| | |||||| |||||    
T  26206848 agaaatgatatttgaacatctattttatgacaatttttgttataactttctctctcatactcacattattttttactttatctc 26206931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 44287511 - 44287443
Alignment:
Q  160 gagaaatgatatttgaacatct-tttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    ||||||||||||||||||| || ||||| ||| ||||||| |||||||| ||||||  ||||| |||||    
T  44287511 gagaaatgatatttgaacaactattttttacaacttttgtgataattttttctctcatactcacattat 44287443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2688 - 2773
Alignment:
Q  1 aataaaagaataatagttttctttct--gttttatttggtgtaattggatttaattcatgctttatatgatatagtaaagtgattt 84  Q
    ||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  2688 aataaaagaataatagttttctttctatgttttatttggtgtaaatggatttaattcatgctatatatgatatagtaaagggattt 2773  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 6991881 - 6991795
Alignment:
Q  158 aagagaaatgatatttgaacatcttttt--tgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    |||||||||||||||||||||||| |||  |||||  |||||| |||||||||||||||  ||||| ||||| | |||||| |||||    
T  6991881 aagagaaatgatatttgaacatctatttggtgacaatttttgtgataattttctctctcatactcacattattttttactttatctc 6991795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 9549267 - 9549186
Alignment:
Q  163 aaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    ||||||||||||||||||  |||| ||||| ||||||| | |||||||||||||  ||||| ||||| | |||||| |||||    
T  9549267 aaatgatatttgaacatccattttgtgacaacttttgtgacaattttctctctcatactcacattattttttactttatctc 9549186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 34718115 - 34718199
Alignment:
Q  160 gagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    |||||||||||||||||||||  |||| ||||| ||||||| | || ||||||||||  ||||| ||||| | |||||| |||||    
T  34718115 gagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctctcatactcacattattttttactttatctc 34718199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 32501267 - 32501199
Alignment:
Q  160 gagaaatgatatttgaac-atcttttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    |||||||||||||||||| ||| ||||| ||| ||||| ||| |||||||||||||  ||||| |||||    
T  32501267 gagaaatgatatttgaacaatcattttttacaacttttttaacaattttctctctcatactcacattat 32501199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 17551452 - 17551379
Alignment:
Q  158 aagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattatgt 229  Q
    ||||||||||||||||||||| |  |||||||||| ||||||||| || ||||||||||  ||||| |||||||    
T  17551452 aagagaaatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcacattatgt 17551379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 30423668 - 30423613
Alignment:
Q  158 aagagaaatgatatttgaaca--tcttttttgacagcttttgtaataattttctct 211  Q
    |||||||||||||||||||||  | |||||||||||||||||||| || |||||||    
T  30423668 aagagaaatgatatttgaacaattattttttgacagcttttgtaacaactttctct 30423613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 2075524 - 2075438
Alignment:
Q  158 aagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    |||||||||||||||||||||||  |||  |||||||||||| || || ||||||||||  ||||| ||||| | |||||| |||||    
T  2075524 aagagaaatgatatttgaacatccatttagtgacagcttttgcaacaactttctctctcatactcacattattttttactttatctc 2075438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 22079639 - 22079564
Alignment:
Q  155 tataagagaaatgatatttgaac-atcttttttgacagcttttgtaataattttctctctcgcactcatattatgt 229  Q
    ||||||||||||||||||||||| | | ||||| ||| ||||||| | || |||||||||| |||||| |||||||    
T  22079639 tataagagaaatgatatttgaacaaccattttttacaacttttgtgacaactttctctctcacactcacattatgt 22079564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 35213632 - 35213576
Alignment:
Q  160 gagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctc 214  Q
    |||||||||||||||||||||  |||| ||||| ||||||||| || ||||||||||    
T  35213632 gagaaatgatatttgaacatctattttgtgacaacttttgtaacaactttctctctc 35213576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 5327665 - 5327594
Alignment:
Q  158 aagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    |||||||||||||||||||||||  |||  ||||| ||||| ||| || ||||||||||  |||||||||||    
T  5327665 aagagaaatgatatttgaacatccatttagtgacaacttttataacaactttctctctcatactcatattat 5327594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 8821629 - 8821714
Alignment:
Q  159 agagaaatgatatttgaacatcttttt--tgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    ||||||||||||||||||||||| |||  ||||| ||||||||| || ||||||||||  ||||| ||||| | |||||| |||||    
T  8821629 agagaaatgatatttgaacatctatttagtgacaacttttgtaacaactttctctctcatactcacattattttttactttatctc 8821714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 32767674 - 32767760
Alignment:
Q  158 aagagaaatgatatttgaacatcttttt--tgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    ||||||||||||||||||| |||  |||  ||||| |||||| ||||||||||||||||  ||||| ||||| | |||||| |||||    
T  32767674 aagagaaatgatatttgaatatccatttagtgacaacttttgcaataattttctctctcatactcacattattttttactttatctc 32767760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 41443264 - 41443193
Alignment:
Q  158 aagagaaatgatatttgaac-atct-tttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    |||||||||||||||||||| |||  ||||||||| ||||||| |||||||||||||||  ||||| |||||    
T  41443264 aagagaaatgatatttgaacgatcactttttgacaacttttgtgataattttctctctcatactcacattat 41443193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 6178496 - 6178426
Alignment:
Q  160 gagaaatgatatttgaacatct-tttttgacagcttttgtaataattttctctctcgcactcatattatgt 229  Q
    ||||||||||||||| ||| || ||||||||| ||||||| | |||||||||||||  ||||| |||||||    
T  6178496 gagaaatgatatttgtacaactatttttgacaacttttgtgacaattttctctctcatactcacattatgt 6178426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 44677556 - 44677471
Alignment:
Q  159 agagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    ||||||||||||||||||||||  |||  ||||| |||||| || |||||||||||||  ||||| ||||| | |||||| |||||    
T  44677556 agagaaatgatatttgaacatccatttagtgacaacttttgcaacaattttctctctcatactcacattattttttactttatctc 44677471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 22371191 - 22371247
Alignment:
Q  160 gagaaatgatatttgaacatcttttt--tgacagcttttgtaataattttctctctc 214  Q
    |||||||||||||||||||||  |||  ||| | |||||||||||||||||||||||    
T  22371191 gagaaatgatatttgaacatccatttagtgataacttttgtaataattttctctctc 22371247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 46852203 - 46852135
Alignment:
Q  159 agagaaatgatatttgaacat-cttttttgacagcttttgtaataattttctctctcgcactcatatta 226  Q
    ||||||||||||||||||||| | ||| ||| ||||||||| | || ||||||||||  ||||||||||    
T  46852203 agagaaatgatatttgaacatccatttatgatagcttttgtgacaactttctctctcatactcatatta 46852135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 49417573 - 49417644
Alignment:
Q  158 aagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    |||||||||||||||||||||||  |||| ||||| ||||||| | || ||||||||||  ||||| |||||    
T  49417573 aagagaaatgatatttgaacatctattttatgacaacttttgtgacaactttctctctcatactcacattat 49417644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 54773827 - 54773756
Alignment:
Q  158 aagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    |||||||||||||||||||||||  |||  ||||| ||||| ||| || ||||||||||  |||||||||||    
T  54773827 aagagaaatgatatttgaacatccatttagtgacaacttttataacaactttctctctcatactcatattat 54773756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 45082980 - 45083049
Alignment:
Q  159 agagaaatgatatttgaacatct-tttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    |||||||||||||||||||| |  ||||||||| ||||||| |||||||||||||||  ||||| |||||    
T  45082980 agagaaatgatatttgaacaaccatttttgacaacttttgtgataattttctctctcatactcaaattat 45083049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 32696178 - 32696237
Alignment:
Q  157 taagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctc 214  Q
    ||||||||||||||||||||||||  |||||||||| || |||| |||| ||||||||||    
T  32696178 taagagaaatgatatttgaacatcaattttttgacaactattgtgataactttctctctc 32696237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 14443193 - 14443267
Alignment:
Q  155 tataagagaaatgatatttgaaca-tc-ttttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    |||| ||||||||||||||||||| || |||||||||| ||||||| | |||||||||||||  ||| |||||||    
T  14443193 tatatgagaaatgatatttgaacaatcattttttgacaacttttgtgacaattttctctctcatacttatattat 14443267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 51255741 - 51255802
Alignment:
Q  155 tataagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctc 214  Q
    |||||||||||||||||||||||| |  |||||||||| ||||||| | || ||||||||||    
T  51255741 tataagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctc 51255802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 12595703 - 12595647
Alignment:
Q  159 agagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctct 213  Q
    ||||||||||||||||||||||  |||||||| |  |||||| ||||||||||||||    
T  12595703 agagaaatgatatttgaacatccattttttgataatttttgtcataattttctctct 12595647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 14010192 - 14010121
Alignment:
Q  157 taagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatatta 226  Q
    ||||||||||||||||||||||||  |||| ||||| |||||  ||||| ||| ||||||  ||||||||||    
T  14010192 taagagaaatgatatttgaacatccattttgtgacaacttttacaataactttttctctcatactcatatta 14010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 26910202 - 26910270
Alignment:
Q  159 agagaaatgatatttgaacatcttttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    |||||||||||||||||| | | ||||| ||| ||||||| | || ||||||||||| | |||||||||    
T  26910202 agagaaatgatatttgaaaaccattttttacaacttttgtgacaactttctctctcgtattcatattat 26910270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 28458450 - 28458364
Alignment:
Q  159 agagaaatgatatttgaacatc---ttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    |||||||||||||||||| |||   |||||||||| ||||||| | || ||||||||||  ||||| ||||| | |||||| |||||    
T  28458450 agagaaatgatatttgaaaatccatttttttgacaacttttgtgacaactttctctctcatactcacattattttttactttatctc 28458364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 37297045 - 37297117
Alignment:
Q  156 ataagagaaatgatatttgaac-atcttttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    |||||||||||||||||||||| | | ||||| ||| ||||||| | |||||||||||||  ||||| |||||    
T  37297045 ataagagaaatgatatttgaacaaccattttttacaacttttgtgacaattttctctctcatactcacattat 37297117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 50890148 - 50890076
Alignment:
Q  156 ataagagaaatgatatttgaacatct-tttttgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    ||||||||||||||||||| ||| || ||||||||| ||||||| | || ||||||||||  ||||| |||||    
T  50890148 ataagagaaatgatatttgtacaactatttttgacaacttttgtgacaactttctctctcatactcacattat 50890076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 21486388 - 21486304
Alignment:
Q  160 gagaaatgatatttgaacatcttttt--tgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    |||||||||||||||||||||| |||  ||||| || ||||||||| ||||||||||  ||||| ||||| | |||||| |||||    
T  21486388 gagaaatgatatttgaacatctatttggtgacaactattgtaataactttctctctcatactcacattattttttactttatctc 21486304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 46172478 - 46172409
Alignment:
Q  159 agagaaatgatatttgaacatcttttt-tgacagcttttgtaataattttctctctcgcactcatattat 227  Q
    ||||||||||||||||||||||  ||  ||||| |||||||||||||||||||||||  ||||| |||||    
T  46172478 agagaaatgatatttgaacatccattagtgacaacttttgtaataattttctctctcatactcacattat 46172409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 52362480 - 52362566
Alignment:
Q  158 aagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    |||||||||||||||||||||||  |||| ||||| ||||||| | || ||||||||||  ||||| ||||| | |||||| |||||    
T  52362480 aagagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacattattttttactttatctc 52362566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 10890122 - 10890061
Alignment:
Q  155 tataagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctc 214  Q
    ||||||||||||||||||||||||||  |||| ||||| ||||||| | || ||||||||||    
T  10890122 tataagagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctc 10890061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 15083124 - 15083066
Alignment:
Q  157 taagagaaatgatatttgaac-atcttttttgacagcttttgtaataattttctctctc 214  Q
    ||||||||||||||||||||| | | ||||||||| ||||||| | |||||||||||||    
T  15083124 taagagaaatgatatttgaacaaccatttttgacaacttttgtgacaattttctctctc 15083066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 47214207 - 47214292
Alignment:
Q  159 agagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    ||||||||||||||||||||||  |||| ||||| ||||||| | || ||||||||||  ||||| ||||| | |||||| |||||    
T  47214207 agagaaatgatatttgaacatctattttatgacaacttttgtgacaactttctctctcatactcacattattttttactttatctc 47214292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 9567033 - 9566961
Alignment:
Q  159 agagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattatgt 229  Q
    |||||||||||||||||||| |  |||||||||| ||||||| | || ||||||||||  ||||| |||||||    
T  9567033 agagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacattatgt 9566961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 13162917 - 13162987
Alignment:
Q  158 aagagaaatgatatttgaacatcttttt--tgacagcttttgtaataattttctctctcgcactcatatta 226  Q
    |||||||||||||||||||||||| |||  ||||| |||||| || || ||||||||||  ||||||||||    
T  13162917 aagagaaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcatatta 13162987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 22195202 - 22195145
Alignment:
Q  159 agagaaatgatatttgaacatct--tttttgacagcttttgtaataattttctctctc 214  Q
    |||||||||||||||||||| ||  ||||||||| ||||||| |||| ||||||||||    
T  22195202 agagaaatgatatttgaacaactgatttttgacaacttttgtgataactttctctctc 22195145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 12007260 - 12007201
Alignment:
Q  157 taagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctc 214  Q
    |||||||||||||||||||||| |  |||||||||| ||||||| | || ||||||||||    
T  12007260 taagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctc 12007201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 13729723 - 13729810
Alignment:
Q  157 taagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    ||||||||||||||||||||||||  |||| ||||| |||||| || || ||||| ||||  ||||| ||||| | |||||| |||||    
T  13729723 taagagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctttctcatactcacattattttttactttatctc 13729810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 15325713 - 15325653
Alignment:
Q  155 tataagagaaatgatatttgaac-atcttttttgacagcttttgtaataattttctctctc 214  Q
    ||||||||| ||||||||||||| ||| ||||||||| ||||||| | || ||||||||||    
T  15325713 tataagagatatgatatttgaacaatcatttttgacaacttttgtgacaactttctctctc 15325653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 37352107 - 37352166
Alignment:
Q  157 taagagaaatgatatttgaacatc--ttttttgacagcttttgtaataattttctctctc 214  Q
    |||||||||||||||||||||| |  ||||||||||  |||||| |||||||| ||||||    
T  37352107 taagagaaatgatatttgaacaaccattttttgacaatttttgtgataattttttctctc 37352166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 18660756 - 18660814
Alignment:
Q  157 taagagaaatgatatttgaac-atcttttttgacagcttttgtaataattttctctctc 214  Q
    ||||||||||||||||||||| | | ||||||||| ||||||| | |||||||||||||    
T  18660756 taagagaaatgatatttgaacaaccatttttgacaacttttgtgacaattttctctctc 18660814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 39591683 - 39591750
Alignment:
Q  160 gagaaatgatatttgaacatcttttttgacagcttttgtaataattttctctctcgcactcatattatgt 229  Q
    ||||||||||||||||||| |||||  ||||| |||||| ||||||||||||| |  ||||| |||||||    
T  39591683 gagaaatgatatttgaacaactttt--gacagtttttgtgataattttctctcacatactcacattatgt 39591750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 35099076 - 35098992
Alignment:
Q  160 gagaaatgatatttgaacatcttttt--tgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    |||||||||||||||||||||| |||  ||||| |||||| || || ||||||||||  ||||| ||||| | |||||| |||||    
T  35099076 gagaaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 35098992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 14780497 - 14780438
Alignment:
Q  155 tataagagaaatgatatttgaacatct--tttttgacagcttttgtaataattttctctc 212  Q
    |||||||||||||||||||| ||||||  ||||||||| |||||| ||||| | ||||||    
T  14780497 tataagagaaatgatatttgtacatctactttttgacaacttttgaaataactctctctc 14780438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 20770129 - 20770215
Alignment:
Q  159 agagaaatgatatttgaacatc---ttttttgacagcttttgtaataattttctctctcgcactcatattatgtgttacttcatctc 242  Q
    |||||||||||||||||| |||   |||||||||| ||||||| | || ||||||||||  ||||| ||||| | |||||| |||||    
T  20770129 agagaaatgatatttgaaaatccatttttttgacaacttttgtgacaactttctctctcatactcacattattttttactttatctc 20770215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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