View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_high_50 (Length: 250)
Name: NF11008_high_50
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 51154949 - 51155181
Alignment:
| Q |
10 |
agatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgcttatggggactttgggtgctattggg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
51154949 |
agatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgcttatggggactgtaggtgctattggg |
51155048 |
T |
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| Q |
110 |
aatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttggagattccacaaactcaaaagttgttgatgaagtctctgagg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51155049 |
aatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttggagattccacaaactcaaaagttgttgatgaagtctctgagg |
51155148 |
T |
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| Q |
210 |
taatttactcactgatctcatgtaattggtgaa |
242 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
51155149 |
taatttactcactgatctcatgtaattggtgaa |
51155181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 51143805 - 51144037
Alignment:
| Q |
10 |
agatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgcttatggggactttgggtgctattggg |
109 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51143805 |
agatgtaaccaccaaaacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgcttatggggactttgggtgctattggg |
51143904 |
T |
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| Q |
110 |
aatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttggagattccacaaactcaaaagttgttgatgaagtctctgagg |
209 |
Q |
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| T |
51143905 |
aatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttggagattccacaaactcaaaagttgttgatgaagtctctgagg |
51144004 |
T |
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| Q |
210 |
taatttactcactgatctcatgtaattggtgaa |
242 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
51144005 |
taatttactcactgatcttatgtaattggtgaa |
51144037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 29939253 - 29939020
Alignment:
| Q |
10 |
agatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgcttatggggactttgggtgctattggg |
109 |
Q |
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|||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
29939253 |
agatgaaatcaccaacacagtatccttatacaagcttttctcatttgctgatcctttggattgtttattgatgcttatggggactgtaggtgctattggg |
29939154 |
T |
|
| Q |
110 |
aatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttggagattccacaaactcaaaagttgttgatgaagtctctgagg |
209 |
Q |
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|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||| |
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| T |
29939153 |
aatggaatctctttacccttgatggttttaatatttggaactatgatcaatgcattcggagaatccacaacgtcaaaagttgttgatgaagtctccaagg |
29939054 |
T |
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| Q |
210 |
taatttactcactgatctcatgtaattggtgaag |
243 |
Q |
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|||||| || ||| |||||||||| ||||||||| |
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| T |
29939053 |
taattttctaactaatctcatgtatttggtgaag |
29939020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 51197205 - 51197363
Alignment:
| Q |
10 |
agatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgcttatggggactttgggtgctattggg |
109 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| || | |||||| | |||||||||||| |
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| T |
51197205 |
agatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgattctttggatcatttattgatgtttgttgggactgttggtgctattggg |
51197304 |
T |
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| Q |
110 |
aatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttgg |
168 |
Q |
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|||||| |||| || |||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
51197305 |
aatggaatctcaatgcccttgatgactttaatatttggaaatatgatcaatgcatttgg |
51197363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 49739190 - 49739093
Alignment:
| Q |
26 |
acagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgcttatggggactttgggtgctattgggaatggactctctat |
123 |
Q |
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||||||||||| |||||||||||||||||||| || ||| |||| |||||||||| || | |||||| | |||||| ||||||||||| ||||||| |
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| T |
49739190 |
acagtacccttttacaagcttttctcatttgcagactcttgggattatttattgatgtttgttgggactatcggtgctgttgggaatggagtctctat |
49739093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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