View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_high_8 (Length: 536)
Name: NF11008_high_8
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 26 - 521
Target Start/End: Complemental strand, 37586039 - 37585543
Alignment:
| Q |
26 |
taaataaaaaataaaatgttgaatgagtagaaaatgatgtggtgttcaaatatcacgattgttcgtgttaattgtataaaattgttatacctcaagaaaa |
125 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37586039 |
taaataaaaaataaaatgttgaatgagtaggaaatgatgtggtgtccaaatatcacgattgttcgtgttaattgtataaaattgttatacctcgagaaaa |
37585940 |
T |
|
| Q |
126 |
agtgataacactaaagtaaactaaatatcaaaatgattgaatgtgcaatgaatctaaaatcacctgtaaatctaaactaagcaaacatcgcagcaagata |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37585939 |
agtgataacactaaagtaaactaaatatcaaaatgattgaatgtgcaatgaatctaaaatcacctgtaaatctaaactaagcaaacatcgcaacaagata |
37585840 |
T |
|
| Q |
226 |
aagaatcaaacaatgccgcatcaagatgnnnnnnncagaaatatcaaaaaacccgcttttttaaaatgaagag--aaagagatgcataaggggtgattcc |
323 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37585839 |
aagaatcaaacaatgccgcatcaagatgaaaaaaacagaaatatcaaaaaacccgcttttttaaaatgaagagaaaaagagatgcataaggggtgattcc |
37585740 |
T |
|
| Q |
324 |
taaaaaagaaaaccattcaaatacccattgannnnnnnncctacattcaaatgtccatcctcaatgttaaagatctgtcaatttcctcttgtatcttccc |
423 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37585739 |
taaaaaagaaaaccattcaaatacccattga-tttttttcctacattcaaatgtccatcctcaatgttaaagatctgtcaatttcctattgtatcttccc |
37585641 |
T |
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| Q |
424 |
ctttatcattttttctaacaggtaagatccagccaggtcctagatgttaaatgtctttgaattattaagagatttccttttatacttgcatttgttat |
521 |
Q |
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| T |
37585640 |
ctttatcattttttctaacaggtaagatccagccaggtcctagatgttaaatgtctttgaattattaagagatttccttttatacttgcatttgttat |
37585543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 500
Target Start/End: Complemental strand, 37592801 - 37592680
Alignment:
| Q |
383 |
ctcaatgttaaagatctgtcaatttcctcttgtatcttcccctttatcattttttcta-------acaggtaagatccagccaggtcctagatgttaaat |
475 |
Q |
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|||||||||||||||||| ||||||||||||||||| || || ||||| ||| ||| |||| ||||||||||| |||| |||||||||||| |
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| T |
37592801 |
ctcaatgttaaagatctgccaatttcctcttgtatcctc---ttgatcatgtttgctacagtcttacagataagatccagctaggttctagatgttaaaa |
37592705 |
T |
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| Q |
476 |
gtctttgaattattaagagatttcc |
500 |
Q |
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| T |
37592704 |
atctttgaattattaagagatttcc |
37592680 |
T |
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