View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11008_high_9 (Length: 534)
Name: NF11008_high_9
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 11 - 517
Target Start/End: Complemental strand, 41244290 - 41243779
Alignment:
| Q |
11 |
cacagacaaggctaaattgatgcttaaaactaagatccatgccttaaatatataataatgtaacacaagttatcaaatgtgatgatttttatttttcctg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41244290 |
cacagacaaggctaaattgatgcttaaaactaagatccatgccttaaatatataataatgtaacacaagttatcaaatgtgatgatttttatttttcctg |
41244191 |
T |
|
| Q |
111 |
tgaaaggtaagcaattaagaagaaaatgcttttatgagatgtgaaacaacgataccaagatacaagtatttatagtacaatcctttggtcaagatttatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41244190 |
tgaaaggtaagcaattaagaagaaaatgcttttatgagatgtgaaacaacgataccaagatagaagtatttatagtacaatcctttggtcaagatttatg |
41244091 |
T |
|
| Q |
211 |
catatacca-tgataatgaagccaccgttttctccaactttggtctagctaaatttgtcaattgtgtttatccaatattctactgctacatgatgcatag |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41244090 |
catataccagtgataatgaagccaccgttttctccaactttggtctagctaaatttgtcaattgtgtttatccaatattctactgctacatgatgcatag |
41243991 |
T |
|
| Q |
310 |
accatagttattttgaattttactttgtctaatag----tatatatatggttaatttatatttaattttcaaaagttcgtttgctgggtcaaaaccaaag |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41243990 |
accatagttattttgaattttactttgtctaatagtatatatatatatggttaatatatatttaattttcaaaagttcgtttgctgggtcaaaaccaaag |
41243891 |
T |
|
| Q |
406 |
gcttggagcaaacaataaattaacagagtgaacattgagaatgtgaatagaatatgtgacagacttcatcaacatttgaataaagaaatactcttgtaca |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41243890 |
gcttggagcaaacaataaattaacagagtgaacattgagaatgtgaatagaatatgtgacagacttcatcaacatttgaataaagaaatactcttgtaca |
41243791 |
T |
|
| Q |
506 |
tagatagataga |
517 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41243790 |
tagatagataga |
41243779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 41236758 - 41236682
Alignment:
| Q |
138 |
gcttttatgagatgtgaaacaacgataccaagatacaagtatttatagtacaatcctttggtcaagatttatgcata |
214 |
Q |
| |
|
|||||||||||||||||| || |||| ||||| ||||||||||||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
41236758 |
gcttttatgagatgtgaagtaaagatagcaagacacaagtatttatagtacaatcattttgtctagatttatgcata |
41236682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 41236617 - 41236580
Alignment:
| Q |
367 |
ttaattttcaaaagttcgtttgctgggtcaaaaccaaa |
404 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
41236617 |
ttaattgtcaaaagtttgtttgctgggtcaaaaccaaa |
41236580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University