View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11008_low_1 (Length: 855)

Name: NF11008_low_1
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11008_low_1
NF11008_low_1
[»] chr3 (14 HSPs)
chr3 (1-361)||(44788331-44788691)
chr3 (362-540)||(44789111-44789289)
chr3 (543-761)||(44789326-44789549)
chr3 (3-109)||(44786655-44786761)
chr3 (626-721)||(44792961-44793056)
chr3 (6-133)||(44799978-44800105)
chr3 (632-721)||(44797855-44797944)
chr3 (1-109)||(44783700-44783808)
chr3 (6-110)||(44803827-44803931)
chr3 (6-103)||(44792024-44792121)
chr3 (632-716)||(44801250-44801334)
chr3 (632-721)||(44805742-44805831)
chr3 (6-109)||(44796919-44797022)
chr3 (495-532)||(44792182-44792219)


Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 44788331 - 44788691
Alignment:
Q  1 gtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccatacccttccctgctcgtagaactctagcatcgatctcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44788331 gtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccatacccttccctgctcgtagaactttagcatcgatctcaat 44788430  T
Q  101 ctcctcctacaattacacaagtcatagggaatttttnnnnnnntaaactatctgtgatatattcatcacaattcacacagatccaatatagaaaacccgg 200  Q
    ||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  44788431 ctcctcctacaattacacaagtcatagggaatttttttaaaaataaactaactgtgatatattcatcacaattcacacagatccaatataggaaaccagg 44788530  T
Q  201 aaaagaatctcctattcctcaaattatgtatttgatatcacaaataaaatcgatgttattgtcaaaagttgaaagtagcattaatgatttgctttctgtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44788531 aaaagaatctcctattcctcaaattatgtatttgatatcacaaataaaatcgatgttattgtcaaaagttcaaagtagcattaatgatttgctttctgtt 44788630  T
Q  301 ggttaatcagctatgactagttactttcagttatgttagtgaatgattctgttagcttagt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44788631 ggttaatcagctatgactagttactttcagttatgttagtgaatgattctgttagcttagt 44788691  T

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Target: chr3; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 362 - 540
Target Start/End: Original strand, 44789111 - 44789289
Alignment:
Q  362 gagactcaagtacctaggacttgtcattgtcacacactatattggtcatcttttattgatataaatatgcattttagaagaacataagataaaaatagat 461  Q
    ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44789111 gagactcaaatatccaggacttgtcattgtcacacactatattggtcatcttttattgatataaatatgcattttagaagaacataagataaaaatagat 44789210  T
Q  462 agataaatacgaacgttgacataggcccgactcccacggaaatccagcggcgggaattgcagctgcgcctatcacatcc 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44789211 agataaatacgaacgttgacataggcccgactcccacggaaatccagcggcgggaattgcagctgcgcctatcacatcc 44789289  T

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Target: chr3; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 543 - 761
Target Start/End: Original strand, 44789326 - 44789549
Alignment:
Q  543 cttacctggattctgcaaattaatcaattaatttagggactnnnnnnnntaatatat--caaggaaagaggaagatgaagaga--aggtaggatacgaac 638  Q
    |||||||| |||||||||||||||||||||||||||| |||        ||||||||  || |||||||||||||||||||||  |||||||||||||||    
T  44789326 cttacctgaattctgcaaattaatcaattaatttaggtactaaaaaaaataatatatatcagggaaagaggaagatgaagagagtaggtaggatacgaac 44789425  T
Q  639 gagtaaacgtgagggtatgctcatt-gagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagatctaagacaaactcttt 737  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44789426 gagtaaacgtgagggtatgctcatttgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagatctaagacaaactcttg 44789525  T
Q  738 agtaaatttaactactagctttga 761  Q
    |||||||||| ||| |||||||||    
T  44789526 agtaaatttatctattagctttga 44789549  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 44786655 - 44786761
Alignment:
Q  3 ccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccatacccttccctgctcgtagaactctagcatcgatctcaatct 102  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||  ||| ||| ||||||| |||||  |||||||||||||||    
T  44786655 ccctgagcaaaaatttggccagtttttttcttccttaactccacgcttataacagctatagtctttcctactcgtaggactctgccatcgatctcaatct 44786754  T
Q  103 cctccta 109  Q
    |||||||    
T  44786755 cctccta 44786761  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 626 - 721
Target Start/End: Original strand, 44792961 - 44793056
Alignment:
Q  626 gtaggatacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat 721  Q
    ||||||||||||||||||||||||  |||||| |||||||||||| |||||||||||| | |||| |||||||||||||||| |||||| ||||||    
T  44792961 gtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacgacacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagat 44793056  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 44799978 - 44800105
Alignment:
Q  6 tgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccatacccttccctgctcgtagaactctagcatcgatctcaatctcct 105  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| | || ||| ||||||||||  |   ||| |||||||||||||    
T  44799978 tgagcaaaaatttggcccgtctttttcttcctgaactctacgcttacaacagctatagcatttcctactcgtagaaccttgttatcaatctcaatctcct 44800077  T
Q  106 cctacaattacacaagtcatagggaatt 133  Q
    ||||| ||| || ||| |||||||||||    
T  44800078 cctaccattgcataagccatagggaatt 44800105  T

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Target: chr3; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 632 - 721
Target Start/End: Original strand, 44797855 - 44797944
Alignment:
Q  632 tacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat 721  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||||||| | ||||||||||||||| ||| | |||||||||||||    
T  44797855 tacgaacgagtaaacgtgggggtatgttcattgagaagacgacacgaccaggttcaatgagatccaatcgcagggcgcgcaagattagat 44797944  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 44783700 - 44783808
Alignment:
Q  1 gtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccatacccttccctgctcgtagaactctagcatcgatctcaat 100  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||| |||| ||| |||||||||| || || || ||||||||    
T  44783700 gtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttacaacagctataacctttcctactcgtagaacccttgcttctatctcaat 44783799  T
Q  101 ctcctccta 109  Q
    ||| |||||    
T  44783800 ctcttccta 44783808  T

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Target: chr3; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 44803827 - 44803931
Alignment:
Q  6 tgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccatacccttccctgctcgtagaactctagcatcgatctcaatctcct 105  Q
    |||||||||| |||| | |||||||||||||| |||||||||||||||||||| |   |||| ||| |||||||||| |||||||| |||||||||||||    
T  44803827 tgagcaaaaacttggtccgtctttttcttcctcaactccacgcttacaacagctacggcctttcctactcgtagaaccctagcatcaatctcaatctcct 44803926  T
Q  106 cctac 110  Q
    |||||    
T  44803927 cctac 44803931  T

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Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 44792024 - 44792121
Alignment:
Q  6 tgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccatacccttccctgctcgtagaactctagcatcgatctcaatctc 103  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||||||||| | | |||| |||  ||||| |||||||||||| |||||||||||    
T  44792024 tgagcaaaaacttgtccagtctttttcttcttgaactccacgcttacaacagctacagcctttcctattcgtaaaactctagcatcaatctcaatctc 44792121  T

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Target: chr3; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 632 - 716
Target Start/End: Original strand, 44801250 - 44801334
Alignment:
Q  632 tacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagat 716  Q
    ||||||||||||||||||  |||||| |||||||||| | |||| | ||||||| ||||||||||||||||||||||||||||||    
T  44801250 tacgaacgagtaaacgtggaggtatgttcattgagaaaacgacatggccaggctcaatgagatccaatcgtaggccacgcaagat 44801334  T

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Target: chr3; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 632 - 721
Target Start/End: Original strand, 44805742 - 44805831
Alignment:
Q  632 tacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat 721  Q
    |||||||||||||||||| ||||||| |||||| ||| | |||||| ||||||| ||||| ||| || ||||||||||||||||||||||    
T  44805742 tacgaacgagtaaacgtgggggtatgttcattgtgaaaatgacacggccaggctcaatgacatcgaagcgtaggccacgcaagattagat 44805831  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 44796919 - 44797022
Alignment:
Q  6 tgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccatacccttccctgctcgtagaactctagcatcgatctcaatctcct 105  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||||| |||||| | | |||| |||  || |||||| || | ||| |||||||||||||    
T  44796919 tgagcaaaaacttggccagtttttttcttcctcaactccacgcttagaacagctacagcctttcctagtcttagaaccctggtatcaatctcaatctcct 44797018  T
Q  106 ccta 109  Q
    ||||    
T  44797019 ccta 44797022  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 532
Target Start/End: Original strand, 44792182 - 44792219
Alignment:
Q  495 ccacggaaatccagcggcgggaattgcagctgcgccta 532  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  44792182 ccacggaaatccagctgcgggaattgcggctgcgccta 44792219  T

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