View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_11 (Length: 486)
Name: NF11008_low_11
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 38950544 - 38950075
Alignment:
| Q |
18 |
ctaatttgaagataatattggaacaaactaaatagattcgtcgatatttttt-agaattggtgacaagtcaatgaaatctgaaagaatagaaatgagnnn |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950544 |
ctaatttgaagataatattggaacaaactaaatagattcgttgatatttttttagaattggtgacaagtcaatgaaatctgaaagaatagaaatgagttt |
38950445 |
T |
|
| Q |
117 |
nnnnnnnnnnnnnn---ctccaaccacgtccacgtccaacatggaatttatcccagcgttcaggatgaggatcaggttattttcaccacttcttgtgttt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950444 |
tttttttttttttttctctccaaccacgtccacgtccaacatggaatttatcccagcgttcaggatgaggatcaggttattttcaccacttcttgtgttt |
38950345 |
T |
|
| Q |
214 |
atgg-----------------ttgttataacattacggtggatgactcatttattactaactcgagtatgaattatattggttagagactcacatggtca |
296 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38950344 |
atggatcctgcctctgtatggttgttataatattacggtggatgactcatttattactaactcgagtatgaattat--tggttagagactcacatggtca |
38950247 |
T |
|
| Q |
297 |
tcgatctcttctgatgattctataacaagcttggcttgtaactcggtttttggcagagttgtgagctgtcagaattggaattcaagcagttcgaaatttt |
396 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950246 |
tc----tcttctgatgattctataacaagcttggcttgtaactcggtttt-ggcagagttgtgagctgtcagaattggaattcaagcagttcgaaatttt |
38950152 |
T |
|
| Q |
397 |
gattcaatttaaattggattctaaagtatatatgatagatatggtcctttcaaagtcttccatgaatgatttgcttcttctc |
478 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38950151 |
gatt-----taaattggattctaaagtatatatgatagatatggtcctttcaaagtcttccatgaatgatttgcttcttctc |
38950075 |
T |
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