View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_12 (Length: 458)
Name: NF11008_low_12
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 11625019 - 11625398
Alignment:
| Q |
1 |
tgaattgttgttgttcttgatctctgcggcctccggtggaggatcagcttctttcttttcctcagtatctttatctgcttcaggatcctattaatttgac |
100 |
Q |
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| T |
11625019 |
tgaattgttgttgttcttgatctctgctgcatctggtggaggatcagcttctttcttttcctcagtatctttatctgcttcaggatcctattaatttgac |
11625118 |
T |
|
| Q |
101 |
acaagttttcattaaaggttaacgatgaacatgagacacggcgccaacactaacatgtcgacaccactaattatttgagacaacataa-tgatttaatgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11625119 |
acaagttttcattaaaggttaacgatgaacatgagacatggcaccaacactaacatgtcgacaccactaattatttgagacaacataagtgatttaatgt |
11625218 |
T |
|
| Q |
200 |
aactattgtatgt-gtcactgtagtgccggtgtcagacacctaacatgtttccaaatctgaagtattagtcctgcatatccaagagcataaatacataat |
298 |
Q |
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||||||||||||| | ||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11625219 |
aactattgtatgtcgacac--cactaattatatcagacacctaacatgtttccaaatctgaagtattagtcctgcatatccaagagcataaatacataat |
11625316 |
T |
|
| Q |
299 |
tccgaattttataaattcaaattagattataactcaaacaagaagaagatcaagaaaaggttgaagaaatttaacatgctta |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11625317 |
tccgaattttataaattcaaattagattataactcaaacaagaagaagatcaagaaaaggttgaagaaatttaacatgctta |
11625398 |
T |
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