View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_15 (Length: 440)
Name: NF11008_low_15
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 12640555 - 12640972
Alignment:
| Q |
19 |
ctttatattctcgaacgaatcttcttgggtgatattctgcattagtctaaacccaagggcctgtctaggctgattgcagatttgatttt-caggaagcag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |
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| T |
12640555 |
ctttatattctcgaacgaatcttcttgggtgatattctgcattagtctaaacccaagggcctgtctaggctgtttggagatttgatttttcaggaagcag |
12640654 |
T |
|
| Q |
118 |
gttcaattctgttatcatttttcgtcggaatgctgattcctggagtcccttttactgctgttatggttttcagtcagtttggtgttagctaacagggttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12640655 |
gttcaattctgttatcatttttcgtcggaatgctgattcttggagtcccttttactgctgttgtggttttcagtcagtttggtgttagctaacagggttg |
12640754 |
T |
|
| Q |
218 |
taattgtgttattactttggatcggaattgcgtcgaagttgtgtgctttcttgatgctcttcttctgccatatttcgtagtatcgtcagtgagaaccgtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12640755 |
taattgtgttattactttggatcggaattgcgtcgaagttgtgcgctttcttgatgctcttcttctgccatatttcgtagtatcgtcagtgagagccgtt |
12640854 |
T |
|
| Q |
318 |
gttcaacagggagttttatagtatttgttcatcatttttgcatttattgtgcttctggattgtgtccgtgagctcaaagagttttgtgccgtctttgcag |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12640855 |
gttcaacagggagttttatagtatttgttcatcatttttgcatttattgtgcttctggattgtgttcgtgagctcaaagagttttgtgccgtctttgcag |
12640954 |
T |
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| Q |
418 |
tttgttgtctctgcttct |
435 |
Q |
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|||||||| | ||||||| |
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| T |
12640955 |
tttgttgtttttgcttct |
12640972 |
T |
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