View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_20 (Length: 395)
Name: NF11008_low_20
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 32166302 - 32165942
Alignment:
| Q |
15 |
aaatctcactatcaacgacgattttggccgcaacatacaagataaaactgtctattccagtcacttaattttgaggtcaatatcatctttggattctttt |
114 |
Q |
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| T |
32166302 |
aaatctcactatcaacgacgattttggccgcaacatacaagataaaactgtctattccagtcacttaattttgaggtcaataccatctttggattctttt |
32166203 |
T |
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| Q |
115 |
ccttttcctactta---gctaaaatcttgcaaattctcaaaaacaaatttgaaaagcttcattctaactttgtcatacagtgttcaattcttgatggtac |
211 |
Q |
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| T |
32166202 |
ccttt-cctacttattagctaaaatcttgcaaattttcaaaaacaaatttgaaaagcttcattctaactttgtcatacagtgttcacttcttgatggtac |
32166104 |
T |
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| Q |
212 |
tgaatcctcacattgatttgtgtttattgtgagctaaagcaggaaaatatatgaa-------agatattagttgaattcaattgtcaatatcttaataca |
304 |
Q |
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| T |
32166103 |
tgaatcctcacattgatttgtgtttattgtgcgctaaagcaggaaaatatatgaaagatgaaagatattacttgaattcaattgtcaatatcttaataca |
32166004 |
T |
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| Q |
305 |
ct-aaaaaagctctccatgaaattctttcacctacattgcaagttttcctgtttatcattgt |
365 |
Q |
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| T |
32166003 |
ctaaaaaaagctctccatgaaattctttcacctacattgcaagttttcctgattatcattgt |
32165942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 367
Target Start/End: Complemental strand, 32172391 - 32172224
Alignment:
| Q |
205 |
atggtactgaatcctcacattgatttgtgtttattgtgagctaaagcaggaaaatat-----atgaaagatattag-ttgaattcaattgtcaatatctt |
298 |
Q |
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| T |
32172391 |
atggtactgaatcttaactttgatttgtgtttgttgtg--ctaaagcaggaaa-tatgaaggatgacagagattacattgaattcaattgtcaatatctt |
32172295 |
T |
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| Q |
299 |
a----atacactaaaaaagctctccatgaaattctt-tcacctacattgcaagttttcctgtttatcattgtta |
367 |
Q |
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| T |
32172294 |
ataccatacactaaaaaaactctccatgaaattcttctcac---cattgcaagcttttctttttatcattgtta |
32172224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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