View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11008_low_27 (Length: 355)

Name: NF11008_low_27
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11008_low_27
NF11008_low_27
[»] chr4 (23 HSPs)
chr4 (2-309)||(50251018-50251325)
chr4 (25-157)||(45372419-45372551)
chr4 (57-141)||(7822585-7822669)
chr4 (58-154)||(7904649-7904745)
chr4 (19-158)||(7238081-7238220)
chr4 (99-158)||(49041499-49041558)
chr4 (93-155)||(7771056-7771118)
chr4 (20-161)||(7774187-7774328)
chr4 (57-158)||(7907941-7908042)
chr4 (93-158)||(48891061-48891126)
chr4 (57-139)||(7813096-7813178)
chr4 (20-126)||(50668622-50668728)
chr4 (90-158)||(48170947-48171018)
chr4 (19-155)||(7789667-7789803)
chr4 (57-141)||(7800253-7800337)
chr4 (105-161)||(7877384-7877440)
chr4 (57-155)||(45366582-45366683)
chr4 (87-158)||(48156788-48156859)
chr4 (99-157)||(48862899-48862960)
chr4 (20-126)||(48902529-48902635)
chr4 (87-153)||(50672166-50672232)
chr4 (57-158)||(49044590-49044691)
chr4 (87-154)||(48898368-48898438)
[»] chr3 (2 HSPs)
chr3 (19-149)||(11006332-11006462)
chr3 (57-127)||(47452299-47452369)
[»] chr5 (2 HSPs)
chr5 (63-158)||(29687673-29687768)
chr5 (22-157)||(1812006-1812141)
[»] chr8 (3 HSPs)
chr8 (90-146)||(12199956-12200012)
chr8 (90-146)||(12444384-12444440)
chr8 (44-158)||(15348465-15348579)
[»] scaffold0508 (1 HSPs)
scaffold0508 (93-157)||(11914-11978)
[»] chr1 (1 HSPs)
chr1 (105-157)||(24309841-24309893)
[»] chr6 (1 HSPs)
chr6 (87-141)||(21980022-21980076)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 2 - 309
Target Start/End: Complemental strand, 50251325 - 50251018
Alignment:
Q  2 gaagacacagccaaaagtgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  50251325 gaagacacagccaaaagtgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctcttatacaattaaagtgggtttctaag 50251226  T
Q  102 tcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttaccacctccactgcacaaactcctcctagaattctagccataatgg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251225 tcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttaccacctccactgcacaaactcctcctagaattctagccataatgg 50251126  T
Q  202 aagattcacctcatgaagtttattctatagattttgaatcgtcccactattatgcttctttagtgaaccttactaagtcttgtttgattccccaatctca 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251125 aagattcacctcatgaagtttattctatagattttgaatcgtcccactattatgcttctttagtgaaccttactaagtcttgtttgattccccaatctca 50251026  T
Q  302 taattttc 309  Q
    ||||||||    
T  50251025 taattttc 50251018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 45372551 - 45372419
Alignment:
Q  25 tgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctga 124  Q
    ||||||| |||||||| | ||||||| || | |||||||| |||||| |||| ||||  || || ||||||| |||||||||||||||| ||||||||||    
T  45372551 tgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctga 45372452  T
Q  125 tccccactgtgcaaatttgcattttcaacttac 157  Q
    ||| || | ||||||||  ||||||||| ||||    
T  45372451 tcctcattttgcaaattcacattttcaaattac 45372419  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 7822585 - 7822669
Alignment:
Q  57 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatt 141  Q
    |||||||| ||||||  ||| ||||  || |||||||||| ||| || |||||||||||||||||||||||||||| ||||||||    
T  7822585 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatccccactttgcaaatt 7822669  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 7904649 - 7904745
Alignment:
Q  58 ggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaact 154  Q
    ||||||| |||||| |||| ||||  || || ||||||| |||||  ||||||||||||||||||||||| |||| ||||||||  |||||||||||    
T  7904649 ggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaact 7904745  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 7238220 - 7238081
Alignment:
Q  19 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttat 118  Q
    ||||||||||||| ||| | ||||  |||||| |  | ||||||||||||||| |||| ||    || || ||||||| |||||||||||||||||||||    
T  7238220 tgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttat 7238121  T
Q  119 ctctgatccccactgtgcaaatttgcattttcaacttacc 158  Q
    |||||| || |||| ||||||||  ||||| |||| ||||    
T  7238120 ctctgaccctcactttgcaaattcacatttccaacatacc 7238081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 49041558 - 49041499
Alignment:
Q  99 aagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 158  Q
    |||||||||||||||||||||||||||||||| | ||||||||  |||||| ||||||||    
T  49041558 aagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaacttacc 49041499  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 7771056 - 7771118
Alignment:
Q  93 gtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaactt 155  Q
    |||| |||||||||||||||||||||||||||||| |||| || |||||  ||||||||||||    
T  7771056 gtttgtaagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaactt 7771118  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 7774328 - 7774187
Alignment:
Q  20 gtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatc 119  Q
    |||||| ||||| |||||||| | |||||| ||  |  || |||| |||||| |||| || || || || ||||||| ||||   |||||||||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  120 tctgatccccactgtgcaaatttgcattttcaacttaccacc 161  Q
    ||||||||||| | ||||||||  ||||||||||| ||||||    
T  7774228 tctgatccccattttgcaaattcacattttcaactcaccacc 7774187  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 7907941 - 7908042
Alignment:
Q  57 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaactta 156  Q
    |||||||| |||||| |||| | ||  || |||| ||||  |||||| ||||||||||||||||||| |||||| | ||||||||  |||||||||||||    
T  7907941 aggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaactta 7908040  T
Q  157 cc 158  Q
    ||    
T  7908041 cc 7908042  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 48891061 - 48891126
Alignment:
Q  93 gtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 158  Q
    |||| ||||||||||||||||||| |||| ||||| || | |||||||| ||||||||||||||||    
T  48891061 gtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttacc 48891126  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 7813096 - 7813178
Alignment:
Q  57 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaa 139  Q
    |||||||| ||||||  ||| ||||  || |||||||||| ||| || |||||||||||||||||||| ||||||| ||||||    
T  7813096 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgaaccccactttgcaaa 7813178  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 50668622 - 50668728
Alignment:
Q  20 gtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatc 119  Q
    |||||||| | |||||||||||| ||||||||| || |||||||| |||||   ||| ||||  || ||||| |||| ||| |||||||||||||| |||    
T  50668622 gtatctgcattacgaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatc 50668721  T
Q  120 tctgatc 126  Q
    || ||||    
T  50668722 tccgatc 50668728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 48171018 - 48170947
Alignment:
Q  90 tgtgtttctaagtcttggttttctcttatctc---tgatccccactgtgcaaatttgcattttcaacttacc 158  Q
    ||||||| ||||||||||||| ||||||||||   |||||| |||| |||||||| |||||||||| |||||    
T  48171018 tgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaattcgcattttcaaattacc 48170947  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 7789667 - 7789803
Alignment:
Q  19 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttat 118  Q
    ||||||||||||| ||| |||| |  |||||| |  | |||||||| |||||| |||| |||   || || || |||| |||||||||||||||| ||||    
T  7789667 tgtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttat 7789766  T
Q  119 ctctgatccccactgtgcaaatttgcattttcaactt 155  Q
    ||| ||||| |||| || |||||  ||||||||||||    
T  7789767 ctccgatcctcactttgaaaattcacattttcaactt 7789803  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 7800253 - 7800337
Alignment:
Q  57 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatt 141  Q
    |||||||| ||||||  ||| ||||  || |||||||||| ||| || |||||||||||| |||||||||||| || ||||||||    
T  7800253 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctgatccccgctttgcaaatt 7800337  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 7877384 - 7877440
Alignment:
Q  105 tggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttaccacc 161  Q
    |||||||||||||||||||||||| | | ||||||||  ||||||||||| ||||||    
T  7877384 tggttttctcttatctctgatcccaattttgcaaattcacattttcaactcaccacc 7877440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 45366683 - 45366582
Alignment:
Q  57 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctc---tgatccccactgtgcaaatttgcattttcaac 153  Q
    ||||| ||||||||| |||| ||||  || ||||| |||| ||||| ||||||||||||||||||   |||| | |||| ||||||||  ||||||||||    
T  45366683 aggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcgtgattcacactttgcaaattcacattttcaac 45366584  T
Q  154 tt 155  Q
    ||    
T  45366583 tt 45366582  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 48156859 - 48156788
Alignment:
Q  87 aagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 158  Q
    ||||| |||| |||||||||||||||||||||||| ||| | || | ||||||||  ||||||||| |||||    
T  48156859 aagtgcgtttgtaagtcttggttttctcttatctccgatactcattttgcaaattctcattttcaaattacc 48156788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 48862899 - 48862960
Alignment:
Q  99 aagtcttggttttctcttatctc---tgatccccactgtgcaaatttgcattttcaacttac 157  Q
    |||||||||||||||||||||||   |||||| |||| ||||||||  ||||||||||||||    
T  48862899 aagtcttggttttctcttatctctcatgatcctcactttgcaaattcacattttcaacttac 48862960  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 48902529 - 48902635
Alignment:
Q  20 gtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatc 119  Q
    |||||| ||||| ||||||||||  ||||||||     ||||||| || ||| ||||||| |  || || ||||||| |||||||||||||||||||||     
T  48902529 gtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttata 48902628  T
Q  120 tctgatc 126  Q
    |||||||    
T  48902629 tctgatc 48902635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 50672166 - 50672232
Alignment:
Q  87 aagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaac 153  Q
    ||||||||||||||||| ||| ||||||| |||||||||| | | | |||||| ||||| |||||||    
T  50672166 aagtgtgtttctaagtcatggctttctctcatctctgatcacaattttgcaaaattgcactttcaac 50672232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 49044691 - 49044590
Alignment:
Q  57 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaactta 156  Q
    ||||||||||||| | ||||  |||  || |||||||||| |||||  |||||||||||||||||| |  |||||| ||||||||  |||||| || |||    
T  49044691 aggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacattttgaaatta 49044592  T
Q  157 cc 158  Q
    ||    
T  49044591 cc 49044590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 48898368 - 48898438
Alignment:
Q  87 aagtgtgtttctaagtcttggttttctcttatctc---tgatccccactgtgcaaatttgcattttcaact 154  Q
    |||||||||| |||||||||||| || ||||||||   |||| |||||| ||||||||  |||||||||||    
T  48898368 aagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaact 48898438  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 11006462 - 11006332
Alignment:
Q  19 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttat 118  Q
    ||||||||||||| ||||||||||  ||||| ||  | |||||||| |||||| | || ||||  || |||||||||| |||||| |||||  |||||||    
T  11006462 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 11006363  T
Q  119 ctctgatccccactgtgcaaatttgcatttt 149  Q
    ||||||||| |||| |||||| | |||||||    
T  11006362 ctctgatcctcactttgcaaaatcgcatttt 11006332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 47452369 - 47452299
Alignment:
Q  57 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatcc 127  Q
    |||||||| |||||| ||||  |||  || |||||  |||||||||| |||||||||||||||||||||||    
T  47452369 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 47452299  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 29687673 - 29687768
Alignment:
Q  63 ccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttacc 158  Q
    ||||||||| |||| ||||  || |||||||||| |||||||||||||||||| || ||| | || |||| ||||||||  |||||||||||||||    
T  29687673 ccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 29687768  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 1812006 - 1812141
Alignment:
Q  22 atctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctc 121  Q
    |||| ||||| ||| |||||  |||||||||  | ||||| |||||||||  ||||||||  |  || || |||| |||||  |||||||||||||||||    
T  1812006 atcttcctcaggaactgatcgttcaaattttgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T
Q  122 tgatccccactgtgcaaatttgcattttcaacttac 157  Q
      ||||||||| ||||||||  ||||||||||||||    
T  1812106 aaatccccactttgcaaattatcattttcaacttac 1812141  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 12199956 - 12200012
Alignment:
Q  90 tgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcat 146  Q
    ||||||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  12199956 tgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcat 12200012  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 12444384 - 12444440
Alignment:
Q  90 tgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcat 146  Q
    ||||||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  12444384 tgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcat 12444440  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 15348465 - 15348579
Alignment:
Q  44 tcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttg 143  Q
    ||||||| |||  ||||| || |||||| |||| ||||  || || || |||| ||||||||||||||||||||||||||||||  |||  |||||||      
T  15348465 tcaaattctagagaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattca 15348564  T
Q  144 cattttcaacttacc 158  Q
    ||||||||| |||||    
T  15348565 cattttcaaattacc 15348579  T

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Target: scaffold0508 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 11914 - 11978
Alignment:
Q  93 gtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttac 157  Q
    |||| |||||| |||||||||||||||||||||   |||| ||||||||  ||||||||||||||    
T  11914 gtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttac 11978  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 24309841 - 24309893
Alignment:
Q  105 tggttttctcttatctctgatccccactgtgcaaatttgcattttcaacttac 157  Q
    ||||||||||||||||||||| | |||| ||||||||  ||||||||||||||    
T  24309841 tggttttctcttatctctgattctcactttgcaaattcacattttcaacttac 24309893  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 21980076 - 21980022
Alignment:
Q  87 aagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatt 141  Q
    |||||||||| |||||||||||||||||| |||||| ||||| ||| ||| ||||    
T  21980076 aagtgtgtttgtaagtcttggttttctctcatctctcatcccaactttgcgaatt 21980022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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