View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_3 (Length: 717)
Name: NF11008_low_3
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 333 - 698
Target Start/End: Complemental strand, 34312325 - 34311960
Alignment:
| Q |
333 |
gtttaatcttatcaataattaacctgatcaaagtgctaaaatgagatcatacaaatctctttatgtctggagaaagtttgtggtgaagttataaagtaat |
432 |
Q |
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| T |
34312325 |
gtttaatcttatcaataattaacctgatcaaagtgctaaaatgagatgatacaaatctctttatgtccggagaaagtttgtggtgaagttataaagtaat |
34312226 |
T |
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| Q |
433 |
tgttagaacttattcaataattaatcattaaaggtatgttttctacttactatattgtggaaaattaatagtaaaacaagcatgttataaacatcaagaa |
532 |
Q |
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| T |
34312225 |
tgttagaacttattcaataattaatcattaaaggtatgttttctacttactatattgtggaaaattaatagtaaaacaagcatgttataaacatcaagaa |
34312126 |
T |
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| Q |
533 |
ccgaacaaacataaaatcatgataactttaggatctacgacatgttggtttgttaaagatattaggaatactacgatggatgaactgattgtagcctctc |
632 |
Q |
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| T |
34312125 |
ccgaacaaacataaaatcatgataactttaggatctacgacatgttggtttgttaaagatattaggaatactacgatggatgaactgattgtagcctctc |
34312026 |
T |
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| Q |
633 |
taatactcataaaacatagaaaacgagagacgagaaattgttgacttgtgattcttccttaacatg |
698 |
Q |
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| T |
34312025 |
taatactcatgaaacatagaaaacgagagacaagaagttgttgacttgtgattcttccttaacatg |
34311960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 34312641 - 34312477
Alignment:
| Q |
18 |
accaatgttattgtgttcattgatagaggccacgattcccctagcaatataagaggcctaaaaggtggcatcttctttaaattaacctctttaaacaatg |
117 |
Q |
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| T |
34312641 |
accaatgttattgtgttcattgatagaggccacgattcccctagcaatataagaggcctaaaaggtggcatcttctttaaattaacctctttaaacaatg |
34312542 |
T |
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| Q |
118 |
atttattttcaaccaattaccacttaattaagttcctagaccaacaccagctagatcagtgcgca |
182 |
Q |
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| T |
34312541 |
atttattttcaaccaattaccacttaattaagttcctagaccaacaccagctagatcagtgcgca |
34312477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 34312425 - 34312359
Alignment:
| Q |
234 |
gggtacaaataataaaagttttaaaagactgaaacttgtcacgttacaatatgttttcaagtttata |
300 |
Q |
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| T |
34312425 |
gggtacaaataataaaagttttaaaagactgaaacttgtcacgttacaatatgttttcaagtttata |
34312359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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