View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_31 (Length: 347)
Name: NF11008_low_31
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 23423914 - 23424233
Alignment:
| Q |
11 |
gagcagagaatgaacgcagcaacactcaccgatgttttcaaagtggcagtgaggccaaaaattgatgatgaagatgggattgtaaaaggagaagaagttg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423914 |
gagcagagaatgaacgcagcaacactcaccgatgttttcaaagtggcagtgaggccaaaaattgatgatgaagatgggattgtaaaaggagaagaagttg |
23424013 |
T |
|
| Q |
111 |
caagagttataaagattataatgaaccaatattcaagggatggtgaaggtttgcaattacggaaaagaattgaagatttgagagttgaggctgctgctgc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23424014 |
caagagttataaagattataatgaaccaatattcaagggatggtgaaggtttgcaattacggaaaagaattgaagatttgagagttgaggctgctgctgc |
23424113 |
T |
|
| Q |
211 |
tgtgagtgaagatggttcctctaggagagcactctctagtttagtgctcaaatgggaggaaagagtaactctcataaattgaaattgttttcgcttatga |
310 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23424114 |
tgtgagtgaagatggttcctctaggagggcactctctagtttagtgctcaaatgggaggaaagagtaactctcataaattgaaattgttttcacttatga |
23424213 |
T |
|
| Q |
311 |
attagttaatatgtatttac |
330 |
Q |
| |
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|||||||||||||||||||| |
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| T |
23424214 |
attagttaatatgtatttac |
23424233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 548690 - 548380
Alignment:
| Q |
11 |
gagcagagaatgaacgcagcaacactcaccgatgttttcaaagtggcagtgaggccaaaaattgatgatgaagatgggattgtaaaaggagaagaagttg |
110 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
548690 |
gagcagagaatgaacgctgcatcactcaccgatgttttcaaagtggcagtgaggccaaaaattgatgatgaagatgggattgtaaaaggagaagaagttg |
548591 |
T |
|
| Q |
111 |
caagagttataaagattataatgaaccaatattcaagggatggtgaaggtttgcaattacggaaaagaattgaagatttgagagttgaggctgctgct-- |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
548590 |
caagagttataaagattataatgaaccaatattcaagggatggtgaaggtttgcaattacggaaaagaattgaagatttgagagttgaggctgctgctgc |
548491 |
T |
|
| Q |
209 |
-gctgtgagtgaagatggttcctctaggagagcactctctagtttagtgctcaaatgggaggaaagagtaactctcataaattgaaattgttttcgctta |
307 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
548490 |
tgctgtgagtgaagatggttcctctaggagggcactctctagtttagtgctcaaatgggaggaaagagtaactctcagaaattgaaattgttttcactta |
548391 |
T |
|
| Q |
308 |
tgaattagtta |
318 |
Q |
| |
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||||||||||| |
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| T |
548390 |
tgaattagtta |
548380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 894405 - 894342
Alignment:
| Q |
48 |
tcaaagtggcagtgaggccaaaaattgatgatgaagatgggattgtaaaaggagaagaagttgc |
111 |
Q |
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|||| ||||| ||||||||||| |||||||||||| |||||| || ||| ||||||||||||| |
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|
| T |
894405 |
tcaaggtggctgtgaggccaaagattgatgatgaaagtgggatagtgaaaagagaagaagttgc |
894342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 8294371 - 8294294
Alignment:
| Q |
34 |
actcaccgatgttttcaaagtggcagtgaggccaaaaattgatgatgaagatgggattgtaaaaggagaagaagttgc |
111 |
Q |
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|||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||| ||||| ||| |||||||| |
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| T |
8294371 |
actcactgatgtactcaaagtggcagtgaggccaaaggttgatgatgaaactgggattataaaacaagaggaagttgc |
8294294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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