View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_33 (Length: 329)
Name: NF11008_low_33
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 51144025 - 51144336
Alignment:
| Q |
1 |
tgtaattggtgaaggttgtttctcctgg-gtaccctacatggcttactacaactttgaatcaaacatttagaaatttgctaacgacgatttactgtgatc |
99 |
Q |
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| T |
51144025 |
tgtaattggtgaatgttatttcttctggtgtaccctacatggcttactacaactttgaatcaaacatttagaaatttgataacgacgacttactgtgatc |
51144124 |
T |
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| Q |
100 |
aggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgtcatttttgcgtaagtgcattagtttctcagttagttcttacaatctaattat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51144125 |
aggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgtcatttttgcgtaagtgcattagtttctcagttagttcttacaatctaattat |
51144224 |
T |
|
| Q |
200 |
tggtttggtacattatgaactaaacttaaataaaatctgtttgctatgtaccagaattaacttgctggatgatcaccggggagagacagagtgcaagaat |
299 |
Q |
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| T |
51144225 |
tggtttggtacattatgaactaaacttaaataaaatctgtttgctatataccagaattaacttgctggatgatcaccggggagagacagagtgcaagaat |
51144324 |
T |
|
| Q |
300 |
tagagggttata |
311 |
Q |
| |
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|||||||||||| |
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| T |
51144325 |
tagagggttata |
51144336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 51155169 - 51155479
Alignment:
| Q |
1 |
tgtaattggtgaaggttgtttctcctgg-gtaccctacatggcttactacaactttgaatcaaacatttagaaatttgctaacgacgatttactgtgatc |
99 |
Q |
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| T |
51155169 |
tgtaattggtgaatgttatttcttctggtgtaccctacatggcttactacaactttgaatcaaacatttagaaattttctaacgatgacttactgtgatc |
51155268 |
T |
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| Q |
100 |
aggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgtcatttttgcgtaagtgcattagtttctcagttagttcttacaatctaa-tta |
198 |
Q |
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| T |
51155269 |
aggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgtcatttttgcgtaagtacattagtttctcagttagttcttccaatctaattta |
51155368 |
T |
|
| Q |
199 |
ttggtttggtacattatgaactaaacttaaataaaatctgtttgctatgtaccagaattaacttgctggatgatcaccggggagagacagagtgcaagaa |
298 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51155369 |
ttggtttggtacattctgaacta-----aaataaaatctgtttgctatgtaccagaactaacttgttggatgatcaccggggagagacagagtgcaagaa |
51155463 |
T |
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| Q |
299 |
ttagagggttatacct |
314 |
Q |
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|||||||||||||||| |
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| T |
51155464 |
ttagagggttatacct |
51155479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 48 - 314
Target Start/End: Complemental strand, 29938866 - 29938604
Alignment:
| Q |
48 |
acaactttgaatcaaacatttagaaatttgctaacgacgatttactgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgt |
147 |
Q |
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|||||||| ||||||||||||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||||| |
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| T |
29938866 |
acaactttaaatcaaacatttaaaaatttactaacgacgacttactgtggtcaggtgtctctgaaatttgtatacctggcggcgggtagctttgttgcgt |
29938767 |
T |
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| Q |
148 |
catttttgcgtaagtgcattagtttctcagttagttcttacaatcta-attattggtttggtacattatgaactaaacttaaataaaatctgtttgctat |
246 |
Q |
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||| ||||||||||| |||||||||| |||||| || |||| |||| ||||| | |||| ||||||| | | ||||||| |||||||||| |
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| T |
29938766 |
catgtttgcgtaagtacattagtttcgcagttaatttgtacagtctatcttattactgtggtgcattatg-----accccaaataaaccatgtttgctat |
29938672 |
T |
|
| Q |
247 |
gtaccagaattaacttgctggatgatcaccggggagagacagagtgcaagaattagagggttatacct |
314 |
Q |
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|||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
29938671 |
gtactagaggtaacttgctggatgatcactggggagagacagagtgcaagaattagaggcttatacct |
29938604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 51197777 - 51197899
Alignment:
| Q |
93 |
tgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgtcatttttgcgtaagtgcattagtttctcagttagttcttacaatc |
192 |
Q |
| |
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|||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||| |||| ||||||| |||||||| || ||||||||||||||| |
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| T |
51197777 |
tgtgttcaggtgtccttgaaattcgtatacttggctgcgggtaccttcgttgcgtctcttttacgtaagtacattagttcatctattagttcttacaatc |
51197876 |
T |
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| Q |
193 |
taat-tattggtttggtacatta |
214 |
Q |
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|||| |||| ||||||| ||||| |
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| T |
51197877 |
taatgtattagtttggttcatta |
51197899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 51197924 - 51197994
Alignment:
| Q |
244 |
tatgtaccagaattaacttgctggatgatcaccggggagagacagagtgcaagaattagagggttatacct |
314 |
Q |
| |
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|||||| |||| || |||||||||||||| ||||| ||||||||| ||||||||| ||| | |||||||| |
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| T |
51197924 |
tatgtatcagagttgacttgctggatgattaccggtgagagacaggctgcaagaatcagaagcttatacct |
51197994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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