View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_34 (Length: 318)
Name: NF11008_low_34
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 32266833 - 32267124
Alignment:
| Q |
1 |
atcatcatcagtatcatcagattgagtatcctcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtccacaaagtgct |
100 |
Q |
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| T |
32266833 |
atcatcatcagtatcatcagattgagtatcctcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtccacaaagtgct |
32266932 |
T |
|
| Q |
101 |
ttcaatgaaggaaaacctttcccacattctttgcagaatttgatcatttcattttgttccaatgtggttnnnnnnnnnnnnnnnnnntgatgattataat |
200 |
Q |
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| T |
32266933 |
ttcaatgaaggaaaacctttcccacattctttgcagaatttgatcatttcattttgttccaatgtggttgcagcagcagtagcagcatgatgattataat |
32267032 |
T |
|
| Q |
201 |
gatgatgatgagaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtttccaccatcaccaacaccaccagca |
292 |
Q |
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| T |
32267033 |
gatgatgatgagaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtttccaccatcaccaacaccagcagca |
32267124 |
T |
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Back To:
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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 19301397 - 19301476
Alignment:
| Q |
62 |
tctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctttcccacattctttgcagaattt |
141 |
Q |
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| T |
19301397 |
tctttctcagagtgacaagccatgtgaccacacagtgctttcaatgatggaaaaccttttccacattctttgcagaattt |
19301476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 19301508 - 19301582
Alignment:
| Q |
215 |
tgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtttccaccatcaccaacaccacca |
289 |
Q |
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||||||||||| |||||||||||||||| ||||| ||||||||||| ||||| ||| |||||||| ||| |||| |
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| T |
19301508 |
tgcacaaacctagttgttttcttgggattctctctaagaccataaataaggttaccatcatcaccaccactacca |
19301582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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