View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11008_low_35 (Length: 317)

Name: NF11008_low_35
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11008_low_35
NF11008_low_35
[»] chr4 (1 HSPs)
chr4 (16-308)||(43794968-43795260)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 43794968 - 43795260
Alignment:
Q  16 caaaaaaggcagaccttagcggacttccatgtacttacaaaatacccagaaacctttaagagagcaaggactggacgcgattaagctgtagctcatgcag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43794968 caaaaaaggcagaccttagcggacttccatgtacttacaaaatacccagaaacctttaagagagcaaggactggacacgattaagctgtagctcatgcag 43795067  T
Q  116 tctggcttttattctttagtttgaaatcatgctgtttccatatagttcagtccagacattttaagtctattgcttcgtccaaaagtctattatactcaag 215  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43795068 tctggcttttattctttagtttgaaatcatgctgtttgcatatagttcagtccagacattttaagtctattgcttcgtccaaaagtctattatactcaag 43795167  T
Q  216 ctttgcttcttcgagtctactcctaagctgtgtcacctgcacaatcatatctttaattagtcaacctccaaatagtatattttcattctgtgc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43795168 ctttgcttcttcgagtctactcctaagctgtgtcacctgcacaatcatatctttaattagtcaacctccaaatagtatattttcattctgtgc 43795260  T

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