View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_40 (Length: 294)
Name: NF11008_low_40
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_40 |
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| [»] scaffold0020 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 27 - 279
Target Start/End: Original strand, 39347601 - 39347853
Alignment:
| Q |
27 |
atatgatatgattactggccagcagcaaaagcttcaacagggaaagtcttagtgataccagcaagactcttgaaatgaatcttcccagttggttgttcat |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39347601 |
atatgatatgattactggccagcagcaaaagcttcaacagggaaagtcttagtgataccagcaagactcttgaaatgaatcttcccagttggttgttcat |
39347700 |
T |
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| Q |
127 |
caacagtaatctcattaacaggtggccataacatgagttccttagctttcacgcctttaagtttcttaatcttcttctttgaaatgtaacctgttatctc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39347701 |
caacagtaatctcattaacaggtggccataacatgagttccttagctttcacgcctttaagtttcttaatcttcttctttgaaatgtaacctgttatctc |
39347800 |
T |
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| Q |
227 |
agtatcatagctcacaagcttgcttaccaaattgaacttatgctccactttct |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39347801 |
agtatcatagctcacaagcttgcttaccaaattgaacttatgctccactttct |
39347853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 33 - 279
Target Start/End: Original strand, 39345420 - 39345666
Alignment:
| Q |
33 |
tatgattactggccagcagcaaaagcttcaacagggaaagtcttagtgataccagcaagactcttgaaatgaatcttcccagttggttgttcatcaacag |
132 |
Q |
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| T |
39345420 |
tatgattactggcaaacagcaaaagcttcaacagggaaagtcttggtgataccaccataactcttgaaatgaatttttccagttggttcttcatcaacaa |
39345519 |
T |
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| Q |
133 |
taatctcattaacaggtggccataacatgagttccttagctttcacgcctttaagtttcttaatcttcttctttgaaatgtaacctgttatctcagtatc |
232 |
Q |
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| T |
39345520 |
taatctcattgataggaggccgtaacatgagttctttaacattaacacctttaagcatcttaatattcttctttgaaatgtaacctgttatctcaatatc |
39345619 |
T |
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| Q |
233 |
atagctcacaagcttgcttaccaaattgaacttatgctccactttct |
279 |
Q |
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| T |
39345620 |
atagctcacaaccttgtttatcatattgaatttatgttccactttct |
39345666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 4792409 - 4792613
Alignment:
| Q |
37 |
attactggccagcagcaaaagcttcaacagggaaagtcttagtgataccagcaagactcttgaaatgaatcttcccagttggttgttcatcaacagtaat |
136 |
Q |
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||||||| || | ||||||||| ||||| |||||||| || ||||||||||| | ||||||||| |||||||| ||| | || |||||| | | |||| |
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| T |
4792409 |
attactgtcccgtagcaaaagcctcaactgggaaagttttggtgataccagctaaactcttgaagtgaatctttccattgagtgtttcatctatattaat |
4792508 |
T |
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| Q |
137 |
ctcattaacaggtggccataacatgagttccttagctttcacgcctttaagtttcttaatcttcttctttgaaatgtaacctgttatctcagtatcatag |
236 |
Q |
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||||| ||||| ||||| | ||||||||| || |||||||| ||||| || |||||||| ||||| || | |||||||| | || ||||||||||| |
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| T |
4792509 |
ttcattgacaggaggccaaagcatgagttctttggctttcacccctttgagcttcttaattttctttttcaacatgtaaccattgatttcagtatcataa |
4792608 |
T |
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| Q |
237 |
ctcac |
241 |
Q |
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||||| |
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| T |
4792609 |
ctcac |
4792613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 2634 - 2486
Alignment:
| Q |
27 |
atatgatatgattactggccagcagcaaaagcttcaacagggaaagtcttagtgataccagcaagactcttgaaatgaatcttcccagttggttgttcat |
126 |
Q |
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|||||||||||||| |||||| ||||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
2634 |
atatgatatgattattggccaccagcaaaagcttcaagagggaaagtcttggtgatacccgcaacactcttgaaatgaatcttcccagttggttgttcat |
2535 |
T |
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| Q |
127 |
caacagtaatctcattaacaggtggccataacatgagttccttagctttca |
177 |
Q |
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||| ||| |||||| ||||||| || ||| ||||||||||||||||||||| |
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| T |
2534 |
caa-agt-atctcaataacaggagggcatgacatgagttccttagctttca |
2486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 8646 - 8738
Alignment:
| Q |
94 |
tcttgaaatgaatcttcccagttggttgttcatcaacagtaatctcattaacaggtggccataacatgagttccttagctttcacgcctttaag |
187 |
Q |
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||||||||||||| |||| ||||||||||||||||||| | | | | ||||||| | ||| |||||| ||||||||||||||| |||||||| |
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| T |
8646 |
tcttgaaatgaatgttcctagttggttgttcatcaacaat-ctatgagtaacaggagagcatgacatgaattccttagctttcacacctttaag |
8738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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