View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_42 (Length: 276)
Name: NF11008_low_42
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_42 |
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| [»] scaffold0983 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 29255988 - 29255734
Alignment:
| Q |
14 |
cacatatgatttaaactcgagtgctcttgatcagttcatcctttaaactaaaactcattaacaatgtgagctcaacacaatggttaacgacacacacaca |
113 |
Q |
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| T |
29255988 |
cacatatgatttaaactcgagtgctcttgatcagttcatcctttaaactgaaactcattaacaatgtgagctcaacacaatggttaacgacacacacaca |
29255889 |
T |
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| Q |
114 |
tgacatatcttatggactattagattaaaaatagacggttgagatnnnnnnnngtcacatatgtacctctccatattatatcaattcacataaactcatt |
213 |
Q |
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| T |
29255888 |
tgacatatcttatggactattagattaaaaatagacggttgagataaaaaaaagtcacatatatacctctccttattatataaattcacataaactcatt |
29255789 |
T |
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| Q |
214 |
tactttttcatgttcttcttcccacaatcaaaatttctgctaccatcttcttctc |
268 |
Q |
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| T |
29255788 |
tactttttcatgttcttcttcccacaatcaaaatttctgctaccatcttcttctc |
29255734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 7725631 - 7725555
Alignment:
| Q |
167 |
gtcacatatgtacctctccatattatatcaattcacataaactcatttactttttcatgttcttcttcccacaatca |
243 |
Q |
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| T |
7725631 |
gtcacatatgcacctcactttattatatcaattctcataaattcatttcccttttcatcttcttctccccacaatca |
7725555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 3803164 - 3803255
Alignment:
| Q |
167 |
gtcacatatgtacctctccatattatatcaattcacataaactcatttactttttcatgttcttcttcccacaatcaaaatttctgctacca |
258 |
Q |
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| T |
3803164 |
gtcacatatgtacctcaccttattatatcaattctcataaactcatttcccttttcatctacttctccccacaatcaagatttgtgctacca |
3803255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 30610238 - 30610155
Alignment:
| Q |
175 |
tgtacctctccatattatatcaattcacataaactcatttactttttcatgttcttcttcccacaatcaaaatttctgctaccatct |
261 |
Q |
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| T |
30610238 |
tgtacctcaccttattatatcaattatcataaactcatttcctttttca---tcttctccccacaatcagaatttttgctaccatct |
30610155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0983 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0983
Description:
Target: scaffold0983; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 1916 - 1844
Alignment:
| Q |
169 |
cacatatgtacctctccatattatatcaattcacataaactcatttactttttcatgttcttcttcccacaat |
241 |
Q |
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| T |
1916 |
cacatatgcacctcaccttattatatcaattctcataaactcatttccttttttatcttcttctctccacaat |
1844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 1825492 - 1825431
Alignment:
| Q |
177 |
tacctctccatattatatcaattcacataaactcatttactttttcatgttcttcttcccac |
238 |
Q |
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| T |
1825492 |
tacctcaccttattagatcaattctcataaactcatttcctttttcatcttcttctccccac |
1825431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 11698123 - 11698059
Alignment:
| Q |
168 |
tcacatatgtacctctccatattatatcaattcacataaactcatttactttttcatgttcttct |
232 |
Q |
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| T |
11698123 |
tcacctatgtacctcaacttattacatcaattctcataaactcatttccattttcattttcttct |
11698059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 47362720 - 47362668
Alignment:
| Q |
187 |
tattatatcaattcacataaactcatttactttttcatgttcttcttcccaca |
239 |
Q |
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| T |
47362720 |
tattacatcaattctcataaactcatttcccttttcatcttcttctccccaca |
47362668 |
T |
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