View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11008_low_44 (Length: 261)

Name: NF11008_low_44
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11008_low_44
NF11008_low_44
[»] chr1 (36 HSPs)
chr1 (8-114)||(32161326-32161432)
chr1 (9-116)||(32160666-32160773)
chr1 (9-114)||(20114539-20114644)
chr1 (9-114)||(26944413-26944518)
chr1 (9-114)||(253311-253416)
chr1 (9-114)||(33206037-33206142)
chr1 (8-108)||(46319683-46319783)
chr1 (109-183)||(15354611-15354685)
chr1 (110-184)||(32160677-32160751)
chr1 (110-183)||(26944425-26944498)
chr1 (110-183)||(32161346-32161419)
chr1 (9-114)||(46320487-46320592)
chr1 (110-183)||(33206057-33206130)
chr1 (111-183)||(20114551-20114623)
chr1 (9-100)||(253028-253119)
chr1 (109-183)||(46319696-46319770)
chr1 (110-183)||(253040-253113)
chr1 (110-183)||(46320507-46320580)
chr1 (110-183)||(253331-253404)
chr1 (9-106)||(15354600-15354697)
chr1 (8-65)||(44596794-44596851)
chr1 (110-183)||(44596807-44596880)
chr1 (110-183)||(4031544-4031617)
chr1 (71-114)||(15660260-15660303)
chr1 (70-109)||(21263364-21263403)
chr1 (9-84)||(50117877-50117952)
chr1 (9-114)||(15354118-15354221)
chr1 (110-183)||(15354130-15354201)
chr1 (76-114)||(52427527-52427565)
chr1 (9-94)||(94344-94428)
chr1 (110-183)||(29765583-29765656)
chr1 (69-114)||(33205478-33205523)
chr1 (9-94)||(51271645-51271730)
chr1 (110-183)||(51271645-51271718)
chr1 (9-65)||(471146-471202)
chr1 (139-183)||(50117896-50117940)
[»] chr5 (14 HSPs)
chr5 (9-114)||(35777049-35777154)
chr5 (8-114)||(2532535-2532641)
chr5 (9-107)||(2532020-2532118)
chr5 (110-183)||(2532555-2532628)
chr5 (9-67)||(13568156-13568214)
chr5 (110-183)||(2532032-2532105)
chr5 (110-183)||(35777069-35777142)
chr5 (111-183)||(9784205-9784277)
chr5 (110-183)||(7762298-7762370)
chr5 (120-183)||(13568139-13568202)
chr5 (110-183)||(7757271-7757344)
chr5 (9-94)||(7762298-7762382)
chr5 (120-172)||(43093965-43094017)
chr5 (9-65)||(7757259-7757315)
[»] chr2 (20 HSPs)
chr2 (7-114)||(17688218-17688325)
chr2 (7-114)||(39378348-39378455)
chr2 (7-114)||(28138319-28138426)
chr2 (110-181)||(39377649-39377720)
chr2 (9-114)||(17688792-17688897)
chr2 (9-95)||(39377635-39377721)
chr2 (110-183)||(28138339-28138412)
chr2 (9-94)||(3943246-3943330)
chr2 (110-183)||(17688232-17688305)
chr2 (110-183)||(17688812-17688885)
chr2 (9-114)||(28137791-28137896)
chr2 (110-183)||(43870175-43870248)
chr2 (110-183)||(7190005-7190077)
chr2 (110-183)||(39378368-39378441)
chr2 (9-94)||(43870175-43870260)
chr2 (110-172)||(23347382-23347443)
chr2 (110-183)||(3943246-3943318)
chr2 (110-183)||(28137803-28137876)
chr2 (10-94)||(3940873-3940956)
chr2 (10-42)||(29093939-29093971)
[»] chr8 (22 HSPs)
chr8 (9-107)||(7577050-7577148)
chr8 (9-114)||(7577622-7577727)
chr8 (7-114)||(27704564-27704671)
chr8 (9-107)||(27703995-27704093)
chr8 (110-183)||(7577642-7577715)
chr8 (110-183)||(7577062-7577135)
chr8 (110-183)||(27704007-27704080)
chr8 (110-183)||(27704584-27704657)
chr8 (8-67)||(43262358-43262417)
chr8 (138-183)||(39601650-39601695)
chr8 (139-183)||(39939298-39939342)
chr8 (9-67)||(39601638-39601696)
chr8 (138-180)||(43262374-43262416)
chr8 (7-65)||(44052309-44052367)
chr8 (9-65)||(39604402-39604458)
chr8 (139-183)||(44052309-44052353)
chr8 (139-182)||(39604402-39604445)
chr8 (110-183)||(34366858-34366930)
chr8 (8-65)||(39939298-39939355)
chr8 (110-183)||(41250126-41250198)
chr8 (120-172)||(34234540-34234592)
chr8 (9-65)||(34366846-34366902)
[»] chr6 (15 HSPs)
chr6 (9-107)||(11687933-11688031)
chr6 (110-183)||(11687946-11688019)
chr6 (9-114)||(11687393-11687498)
chr6 (109-183)||(11687405-11687479)
chr6 (138-183)||(28362816-28362861)
chr6 (7-67)||(28362815-28362875)
chr6 (110-183)||(29076377-29076450)
chr6 (110-183)||(29109910-29109983)
chr6 (110-183)||(29111350-29111423)
chr6 (9-65)||(14012457-14012513)
chr6 (9-84)||(29076387-29076462)
chr6 (9-84)||(29109920-29109995)
chr6 (9-84)||(29111360-29111435)
chr6 (139-180)||(3502720-3502761)
chr6 (110-183)||(14012429-14012501)
[»] chr7 (15 HSPs)
chr7 (9-114)||(40323665-40323770)
chr7 (7-114)||(36185590-36185697)
chr7 (110-183)||(40323685-40323758)
chr7 (9-91)||(40323202-40323284)
chr7 (114-181)||(36185614-36185681)
chr7 (9-106)||(36185124-36185220)
chr7 (113-183)||(40323214-40323284)
chr7 (110-183)||(36185136-36185208)
chr7 (9-65)||(48194656-48194712)
chr7 (9-65)||(46738736-46738792)
chr7 (139-183)||(48194656-48194700)
chr7 (73-114)||(31873855-31873896)
chr7 (110-183)||(46738748-46738821)
chr7 (70-114)||(31873396-31873440)
chr7 (9-65)||(46740576-46740632)
[»] chr3 (22 HSPs)
chr3 (9-114)||(5136520-5136625)
chr3 (9-114)||(13742683-13742788)
chr3 (9-114)||(44687485-44687588)
chr3 (9-114)||(5138301-5138406)
chr3 (32-109)||(33304999-33305076)
chr3 (114-183)||(5136532-5136601)
chr3 (110-183)||(5138321-5138394)
chr3 (111-183)||(13743160-13743232)
chr3 (8-114)||(1388131-1388244)
chr3 (110-157)||(33305014-33305061)
chr3 (7-94)||(43478884-43478971)
chr3 (120-183)||(43478894-43478957)
chr3 (110-183)||(13742695-13742768)
chr3 (9-65)||(43476125-43476181)
chr3 (9-65)||(48250952-48251008)
chr3 (109-183)||(44687504-44687576)
chr3 (110-180)||(43476140-43476210)
chr3 (110-183)||(55385083-55385156)
chr3 (139-183)||(1388187-1388231)
chr3 (9-65)||(46993254-46993310)
chr3 (139-183)||(47070414-47070458)
chr3 (70-114)||(54203496-54203540)
[»] chr4 (11 HSPs)
chr4 (8-84)||(51492005-51492080)
chr4 (8-65)||(37015864-37015921)
chr4 (8-65)||(44674098-44674155)
chr4 (110-172)||(16983479-16983541)
chr4 (110-172)||(16984215-16984277)
chr4 (109-183)||(44674111-44674184)
chr4 (139-183)||(51492018-51492062)
chr4 (110-181)||(39590622-39590693)
chr4 (8-94)||(16983455-16983541)
chr4 (120-165)||(39588056-39588101)
chr4 (120-180)||(37959784-37959844)
[»] scaffold0153 (1 HSPs)
scaffold0153 (70-114)||(16888-16932)


Alignment Details
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 32161432 - 32161326
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgca 107  Q
    ||||||||||||||||||| |||||||||||||||| | | ||||||||||||||||| |  ||||||||||||||||| ||||||||||||||||||||    
T  32161432 agagaattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgcccctgcggcagttaactaccgaagtttggaaccggctgca 32161333  T
Q  108 gtaaact 114  Q
    || ||||    
T  32161332 gttaact 32161326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 32160666 - 32160773
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| || |||||| |||||||||||||||| | | ||||||||| |||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  32160666 gagaattgctgatcccacattacataaggctgtgccacacgagtaaatgtcgtttttacccctgcggcagttaactaccgaagtttggaaccggctgcag 32160765  T
Q  109 taaacttc 116  Q
    | ||||||    
T  32160766 ttaacttc 32160773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 20114539 - 20114644
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||||||||||||| |||||||||||||||| | | ||||||||||||||||| |  |||||| |||||||||| |||||| ||||||||||||||    
T  20114539 gagaattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgcccctgcggtagttaactaccgaagttgggaaccggctgcag 20114638  T
Q  109 taaact 114  Q
    | ||||    
T  20114639 ttaact 20114644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 26944413 - 26944518
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||||||||||||| |||||||||||||||| | | ||||||||||||||||| |  || |||||||||||||  |||||||||||||||||||||    
T  26944413 gagaattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgcccctacggcagttaactatcgaagtttggaaccggctgcag 26944512  T
Q  109 taaact 114  Q
    | ||||    
T  26944513 ttaact 26944518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 253416 - 253311
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||||||||||||| |||| ||||||||||| | | ||||||||||| ||||| |  |||||| |||||||||| |||||||||||||||||||||    
T  253416 gagaattgttgttcccacattacgtaaggctgtgccacacgagtaaatgacatttttgcccctgcggtagttaactaccgaagtttggaaccggctgcag 253317  T
Q  109 taaact 114  Q
    | ||||    
T  253316 ttaact 253311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 33206142 - 33206037
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| ||||||||| ||||||||| |||||| | | ||||||||||| |||||||  ||||||||||||| ||| |||||||||||||||||||||    
T  33206142 gagaattgctgttcccacattacataagactgtgccacacgagtaaatgacatttttacccctgcggcagttaattaccgaagtttggaaccggctgcag 33206043  T
Q  109 taaact 114  Q
    | ||||    
T  33206042 ttaact 33206037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 46319683 - 46319783
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgca 107  Q
    ||||||||||||||||||| ||||||| |||||||| | | |||||||||||||||||  | |||||| |||||||||| ||||||| ||||||||||||    
T  46319683 agagaattgttgttcccacattacatatggctgtgccacacgagtaaatgacgtttttgttcctgcggtagttaactaccgaagtttagaaccggctgca 46319782  T
Q  108 g 108  Q
    |    
T  46319783 g 46319783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 15354611 - 15354685
Alignment:
Q  109 taaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  15354611 taaacttcaatatttaactgctgcagggataaaaacgtcatttactcgtgtgacacaaccttatgtaatgtggga 15354685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 32160751 - 32160677
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtgggat 184  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||    
T  32160751 aaacttcggtagttaactgccgcaggggtaaaaacgacatttactcgtgtggcacagccttatgtaatgtgggat 32160677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 26944498 - 26944425
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||||| ||||| ||||||||||||||||    
T  26944498 aaacttcgatagttaactgccgtaggggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtggga 26944425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 32161346 - 32161419
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||||    
T  32161346 aaacttcggtagttaactgccgcaggggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtggga 32161419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 46320592 - 46320487
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| ||||||||| |||||||||| ||||| | | ||||||||||||||||| |  |||||| |||||||||| |||||||| ||||||||||||    
T  46320592 gagaattgctgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgcccctgcggtagttaactaccgaagtttgaaaccggctgcag 46320493  T
Q  109 taaact 114  Q
    | ||||    
T  46320492 ttaact 46320487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 33206057 - 33206130
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| || ||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||    
T  33206057 aaacttcggtaattaactgccgcaggggtaaaaatgtcatttactcgtgtggcacagtcttatgtaatgtggga 33206130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 20114623 - 20114551
Alignment:
Q  111 aacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||| ||||||||| ||||||||  |||||||||||||||||||||| ||||| ||||||||||||||||    
T  20114623 aacttcggtagttaactaccgcaggggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtggga 20114551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 253028 - 253119
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaacc 100  Q
    |||||||| ||||||||| |||||||||||||||| | | ||||||||||||||||| |  |||||| ||||| |||| |||||||||||||    
T  253028 gagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgcccctgcggtagttatctaccgaagtttggaacc 253119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 46319770 - 46319696
Alignment:
Q  109 taaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||| ||||||||| ||||||| | |||||||||||||||||||||| ||||| | ||||||||||||||    
T  46319770 taaacttcggtagttaactaccgcaggaacaaaaacgtcatttactcgtgtggcacagccatatgtaatgtggga 46319696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 253113 - 253040
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||| ||||| ||||||||  |||||||||||||||||||||| ||||| ||||||||||||||||    
T  253113 aaacttcggtagataactaccgcaggggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtggga 253040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 46320507 - 46320580
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||||||||| ||||||||  |||||||||||||||||||||| ||||  ||||||||||||||||    
T  46320507 aaacttcggtagttaactaccgcaggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtggga 46320580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 253331 - 253404
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||||||||| ||||||||  ||||| |||||||||||||||| ||||| |||| |||||||||||    
T  253331 aaacttcggtagttaactaccgcaggggcaaaaatgtcatttactcgtgtggcacagccttacgtaatgtggga 253404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 15354697 - 15354600
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgc 106  Q
    |||||||| ||||||||| |||||||||| ||||  | | ||||||||||||||||||   |||| |||||||| || |||||||| |||||||||||    
T  15354697 gagaattgctgttcccacattacataaggttgtgtcacacgagtaaatgacgtttttatccctgcagcagttaaatattgaagtttagaaccggctgc 15354600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 44596794 - 44596851
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    ||||||||||||||||||| ||||||||| |||||| | | |||||||||||||||||    
T  44596794 agagaattgttgttcccacattacataagactgtgccacacgagtaaatgacgttttt 44596851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 44596880 - 44596807
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  ||||||||||||   ||  |||||||||||||||||||||| ||||| ||||||||||||||||    
T  44596880 aaacttcggcagttaactgccgagcgggcaaaaacgtcatttactcgtgtggcacagtcttatgtaatgtggga 44596807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 4031544 - 4031617
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||||||||||||||| ||||||| |||||  ||||||||| ||||| || |  |||||||||| |||||    
T  4031544 aaacttcgatagttaactgctgcagggacaaaaatatcatttacttgtgtggcataaccttatgtaatatggga 4031617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 15660303 - 15660260
Alignment:
Q  71 tgcggcagttaactactgaagtttggaaccggctgcagtaaact 114  Q
    |||||||||||||||| || ||||||||||||||||||| ||||    
T  15660303 tgcggcagttaactaccgatgtttggaaccggctgcagttaact 15660260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 21263364 - 21263403
Alignment:
Q  70 ctgcggcagttaactactgaagtttggaaccggctgcagt 109  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  21263364 ctgcggcagttaactaccgaagtttggaaccgactgcagt 21263403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 50117952 - 50117877
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaact 84  Q
    |||||||| ||||||||| |||||||||| ||||| | | ||||||||||| |||||  |||  ||||||||||||    
T  50117952 gagaattgctgttcccacattacataaggttgtgccacacgagtaaatgacatttttgtttcctcggcagttaact 50117877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 15354118 - 15354221
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| | ||||||| |||||||||| |||   | | ||||||||||| |||||||| || ||  |||||||||  ||||||||||||||||| |||    
T  15354118 gagaattgctattcccacattacataaggttgtc--acacgagtaaatgacatttttactcctacgatagttaactatcgaagtttggaaccggctacag 15354215  T
Q  109 taaact 114  Q
    | ||||    
T  15354216 ttaact 15354221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 15354201 - 15354130
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||||||||||||  || |||  |||||| ||||||||||||||||  |||  ||||||||||||||||    
T  15354201 aaacttcgatagttaactatcgtaggagtaaaaatgtcatttactcgtgtg--acaaccttatgtaatgtggga 15354130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 52427565 - 52427527
Alignment:
Q  76 cagttaactactgaagtttggaaccggctgcagtaaact 114  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  52427565 cagttaactaccgaagtttggaaccggctgcagttaact 52427527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 94344 - 94428
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagttt 94  Q
    |||||||||||||  ||| ||  |||||||||||| | ||||||||||||||||||| |  || |||||||||||| | |||||||    
T  94344 gagaattgttgtttacacatttgataaggctgtgccacatgagtaaatgacgtttttgc-ccttcggcagttaactgccgaagttt 94428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 29765583 - 29765656
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  ||||||||||||  |||| |||||||||||||| |||||||  |||  |||||| |||||||||    
T  29765583 aaacttcggcagttaactgccgaggggacaaaaacgtcatttattcgtgtggtacaaccttatgcaatgtggga 29765656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 33205478 - 33205523
Alignment:
Q  69 tctgcggcagttaactactgaagtttggaaccggctgcagtaaact 114  Q
    ||||||||||||| |||| |||||||||||||||||| ||| ||||    
T  33205478 tctgcggcagttacctaccgaagtttggaaccggctgtagttaact 33205523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 51271730 - 51271645
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagttt 94  Q
    |||||||||||||||||  |||||||||| ||||| | | | ||||||||||||||| |  |  |||||||||||| | |||||||    
T  51271730 gagaattgttgttcccaaattacataaggttgtgccacacgggtaaatgacgtttttgccccctcggcagttaactgccgaagttt 51271645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 51271645 - 51271718
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  ||||||||||||  |||  ||||||||||||||| |||||| ||||  |||||||||| |||||    
T  51271645 aaacttcggcagttaactgccgagggggcaaaaacgtcatttacccgtgtggcacaaccttatgtaatttggga 51271718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 471202 - 471146
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||||||||||||| |||||||||| ||||| |   | |||||||||||||||    
T  471202 gagaattgttgttcccacattacataaggttgtgccacgcgggtaaatgacgttttt 471146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 50117896 - 50117940
Alignment:
Q  139 aaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||| |||||||||||||||| ||||  ||||||||||||||||    
T  50117896 aaaaatgtcatttactcgtgtggcacaaccttatgtaatgtggga 50117940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 35777154 - 35777049
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| |||||||||||||||||||| ||||| | | ||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||    
T  35777154 gagaattgatgttcccacgttacataaggttgtgccacacgagtaaatgacgtttttgcctctgcggcagttaactaccgaagtttggaaccggctgcag 35777055  T
Q  109 taaact 114  Q
    | ||||    
T  35777054 ttaact 35777049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 2532641 - 2532535
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgca 107  Q
    ||||||||| ||||||||| |||||||||||||||| | | |||||||||||||||||||  |||||| | |||||||| ||||||||||||||||||||    
T  2532641 agagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgtttttacccctgcggtaattaactaccgaagtttggaaccggctgca 2532542  T
Q  108 gtaaact 114  Q
    || ||||    
T  2532541 gttaact 2532535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 2532020 - 2532118
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgca 107  Q
    |||||||||||||||||| |||||||||||||||| | |  |||||||||||||||| || |||||| |||||||||  ||||||||||||||||||||    
T  2532020 gagaattgttgttcccacattacataaggctgtgccacacaagtaaatgacgtttttgctcctgcggtagttaactatcgaagtttggaaccggctgca 2532118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 2532555 - 2532628
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||||||| | |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  2532555 aaacttcggtagttaattaccgcaggggtaaaaacgtcatttactcgtgtggcacagccttatgtaatgtggga 2532628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 13568214 - 13568156
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttac 67  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||    
T  13568214 gagaattgttgttcccacattacataaggctgtgccatacgagtaaatgacgtttttac 13568156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 2532105 - 2532032
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||||||||||||| |||||||   |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  2532105 aaacttcgatagttaactaccgcaggagcaaaaacgtcatttacttgtgtggcacagccttatgtaatgtggga 2532032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 35777069 - 35777142
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| |||||||||||||||| |  |||||||||||||||||||||| ||||  ||||||||| ||||||    
T  35777069 aaacttcggtagttaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaacgtggga 35777142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 9784205 - 9784277
Alignment:
Q  111 aacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||||||||||||| |||||||  |||||| ||||||| ||||||||||||   |||||||||||||||    
T  9784205 aacttcgatagttaactgtcgcaggggcaaaaacatcatttattcgtgtgacacaactttatgtaatgtggga 9784277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 7762298 - 7762370
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  |||||||||||| ||||  |||||||||| ||||||||||| ||||| ||||||||||||||||    
T  7762298 aaacttcggcagttaactgccg-aggggcaaaaacgtcaattactcgtgtggcacagccttatgtaatgtggga 7762370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 13568139 - 13568202
Alignment:
Q  120 agttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| |||  ||| |||||||||||||||||||| || ||||| ||||||||||||||||    
T  13568139 agttaactaccgatggggtaaaaacgtcatttactcgtatggcacagccttatgtaatgtggga 13568202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 7757344 - 7757271
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  ||||||||| ||  |||  |||||||||||||||||||||| || || ||||||||||||||||    
T  7757344 aaacttcggcagttaactgtcgagggggcaaaaacgtcatttactcgtgtggcatagtcttatgtaatgtggga 7757271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 7762382 - 7762298
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagttt 94  Q
    |||||||| ||||||||| |||||||||||||||| | | |||||| |||||||||| |  || |||||||||||| | |||||||    
T  7762382 gagaattgctgttcccacattacataaggctgtgccacacgagtaattgacgtttttgcccct-cggcagttaactgccgaagttt 7762298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 43094017 - 43093965
Alignment:
Q  120 agttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttat 172  Q
    |||||||||  | |||| ||||||||||||||||||||||||||||| |||||    
T  43094017 agttaactgttgaaggggtaaaaacgtcatttactcgtgtgacacagccttat 43093965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 7757259 - 7757315
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||| ||||||||| ||||||||| || ||| | | |||||||||||||||||    
T  7757259 gagaattgctgttcccacattacataagactatgccacacgagtaaatgacgttttt 7757315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 17688218 - 17688325
Alignment:
Q  7 aagagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgc 106  Q
    |||||||||| ||||||||| |||||||||||||||| | | || |||||||||||||| || |||||| ||||||||||||||||||||||||||||||    
T  17688218 aagagaattgctgttcccacattacataaggctgtgccacacgaataaatgacgtttttgctcctgcggtagttaactactgaagtttggaaccggctgc 17688317  T
Q  107 agtaaact 114  Q
    ||| ||||    
T  17688318 agttaact 17688325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 39378455 - 39378348
Alignment:
Q  7 aagagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgc 106  Q
    |||||||||||||||||||| ||||||| ||| |||| | | ||||||||||||||||| | | ||||| |||||||||| ||||||||||| |||||||    
T  39378455 aagagaattgttgttcccacattacatatggccgtgccacacgagtaaatgacgtttttgcctttgcggtagttaactaccgaagtttggaatcggctgc 39378356  T
Q  107 agtaaact 114  Q
    ||| ||||    
T  39378355 agttaact 39378348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 28138426 - 28138319
Alignment:
Q  7 aagagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgc 106  Q
    |||||||||| ||||||||| ||||| |||||| ||| | | |||||||||||||||||    ||||| ||||||||||| || ||||||||||||||||    
T  28138426 aagagaattgctgttcccacattacaaaaggctatgccacacgagtaaatgacgtttttgtccctgcgacagttaactaccgatgtttggaaccggctgc 28138327  T
Q  107 agtaaact 114  Q
    ||| ||||    
T  28138326 agttaact 28138319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 39377720 - 39377649
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtgg 181  Q
    |||||||||||||||||| |||||| |  |||||||||||||||||||||| ||||| ||||||||||||||    
T  39377720 aaacttcgatagttaactaccgcagaggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtgg 39377649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 17688897 - 17688792
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||||||||||||| | |||||||||| ||| | | | ||||||||||||||| |  |||||| |||||||||| |||||||||||| ||| ||||    
T  17688897 gagaattgttgttcccacatcacataaggctatgccacacgtgtaaatgacgtttttgcccctgcggtagttaactaccgaagtttggaactggcggcag 17688798  T
Q  109 taaact 114  Q
    | ||||    
T  17688797 ttaact 17688792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 39377635 - 39377721
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttg 95  Q
    |||||||| |||| |||| |||||||||||||||| | | ||||||||||||||||| | ||||||| |||||||||  ||||||||    
T  39377635 gagaattgctgtttccacattacataaggctgtgccacacgagtaaatgacgtttttgcctctgcggtagttaactatcgaagtttg 39377721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 28138339 - 28138412
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||| ||| |||||||||| |||||||| |||||||||||||||||||||| || || ||| ||||||||||||    
T  28138339 aaacatcggtagttaactgtcgcagggacaaaaacgtcatttactcgtgtggcatagccttttgtaatgtggga 28138412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 3943330 - 3943246
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagttt 94  Q
    |||||||||||||||||| ||| |||||||| ||| | | ||||||||||||||||| || || |||||||||||| | |||||||    
T  3943330 gagaattgttgttcccacattagataaggctatgccacacgagtaaatgacgtttttgctcct-cggcagttaactgccgaagttt 3943246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 17688305 - 17688232
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||  ||||||||| |||||||   |||||||||||||| ||||||| ||||| ||||||||||||||||    
T  17688305 aaacttcagtagttaactaccgcaggagcaaaaacgtcatttattcgtgtggcacagccttatgtaatgtggga 17688232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 17688812 - 17688885
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||||||||| ||||||||  ||||||||||||||| |||||| || || ||||||| ||||||||    
T  17688812 aaacttcggtagttaactaccgcaggggcaaaaacgtcatttacacgtgtggcatagccttatgtgatgtggga 17688885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 28137791 - 28137896
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| ||||||||| ||| |||||| ||||| | | ||||||||||||||||| |   | | ||||||||||||||||||||| ||| || |||||    
T  28137791 gagaattgctgttcccacattatataaggttgtgccacacgagtaaatgacgtttttgcccttacagcagttaactactgaagtttgaaactggttgcag 28137890  T
Q  109 taaact 114  Q
    | ||||    
T  28137891 ttaact 28137896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 43870175 - 43870248
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  ||||||||||||  |||  |||||||||||||||||||||| ||||  ||||||||||||||||    
T  43870175 aaacttcggcagttaactgccgatggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtggga 43870248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 7190005 - 7190077
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  |||||||||||| ||||  |||||||| ||||||||||||| ||||  ||||||||||||||||    
T  7190005 aaacttcggcagttaactgccg-aggggcaaaaacgtaatttactcgtgtggcacaaccttatgtaatgtggga 7190077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 39378368 - 39378441
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||||||||| |||||  |  |||||||||||||||||||||| ||| | | ||||||||||||||    
T  39378368 aaacttcggtagttaactaccgcaaaggcaaaaacgtcatttactcgtgtggcacggccatatgtaatgtggga 39378441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 43870260 - 43870175
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagttt 94  Q
    |||||||| ||||||||| |||||||||| ||||| | | ||||||||||||||||| |  |  |||||||||||| | |||||||    
T  43870260 gagaattgatgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgccccatcggcagttaactgccgaagttt 43870175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 23347382 - 23347443
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttat 172  Q
    ||||||||  |||||||||||| ||||  |||||||||||||||||||||| ||||| |||||    
T  23347382 aaacttcggcagttaactgccgaagggc-aaaaacgtcatttactcgtgtggcacagccttat 23347443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 3943246 - 3943318
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  |||||||||||| |||   |||||||||||||||||||||| || || ||||| ||||||||||    
T  3943246 aaacttcggcagttaactgccg-aggagcaaaaacgtcatttactcgtgtggcatagccttatctaatgtggga 3943318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 28137876 - 28137803
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||  ||||||||||| | | ||  |||||||||||||||||||||| ||||  ||||| ||||||||||    
T  28137876 aaacttcagtagttaactgctgtaagggcaaaaacgtcatttactcgtgtggcacaaccttatataatgtggga 28137803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 3940873 - 3940956
Alignment:
Q  10 agaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagttt 94  Q
    ||||||| || ||||||||||||||  | ||||| ||| |||| ||||||||||||  | || |||||||||||| |||||||||    
T  3940873 agaattgatgatcccacgttacatagcgttgtgccatacgagtgaatgacgttttt-gtccttcggcagttaactgctgaagttt 3940956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 29093971 - 29093939
Alignment:
Q  10 agaattgttgttcccacgttacataaggctgtg 42  Q
    ||||||||||||||||| |||||||||||||||    
T  29093971 agaattgttgttcccacattacataaggctgtg 29093939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 7577050 - 7577148
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgca 107  Q
    |||||||| ||||||||| |||||||||||||||| | |||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||    
T  7577050 gagaattgctgttcccacattacataaggctgtgccacatgagtaaatgacgtttttacccctgcgacagttaactaccgaagtttggaaccggctgca 7577148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 7577727 - 7577622
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| ||||||||| |||||||||||||||| | | |||||||||||||||||||  |||||||| |||||||| |||||||| ||||||||||||    
T  7577727 gagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgtttttacccctgcggcaattaactaccgaagtttgaaaccggctgcag 7577628  T
Q  109 taaact 114  Q
    | ||||    
T  7577627 ttaact 7577622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 27704671 - 27704564
Alignment:
Q  7 aagagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgc 106  Q
    |||||||||| ||||||||| |||||||||||||||| | | || ||||||||||||||||  |||| |||||||||||| |||||||| ||||||||||    
T  27704671 aagagaattgctgttcccacattacataaggctgtgccacacgaataaatgacgtttttacccctgcagcagttaactaccgaagtttgaaaccggctgc 27704572  T
Q  107 agtaaact 114  Q
    ||| ||||    
T  27704571 agttaact 27704564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 27703995 - 27704093
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgca 107  Q
    |||||||| ||||||||| |||||||||||||||| | |  | ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  27703995 gagaattgctgttcccacattacataaggctgtgccacacaaataaatgacgtttttacccctgcggcagttaactaccgaagtttggaaccggctgca 27704093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 7577642 - 7577715
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  7577642 aaacttcggtagttaattgccgcaggggtaaaaacgtcatttactcgtgtggcacagccttatgtaatgtggga 7577715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 7577135 - 7577062
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| |||||||||| ||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||    
T  7577135 aaacttcggtagttaactgtcgcaggggtaaaaacgtcatttactcatgtggcacagccttatgtaatgtggga 7577062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 27704080 - 27704007
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| |||||||||||||||||| ||||||||||||||| | ||||| ||||| ||||||||||||||||    
T  27704080 aaacttcggtagttaactgccgcaggggtaaaaacgtcatttatttgtgtggcacagccttatgtaatgtggga 27704007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 27704584 - 27704657
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||||||||||| |||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  27704584 aaacttcggtagttaactgctgcaggggtaaaaacgtcatttattcgtgtggcacagccttatgtaatgtggga 27704657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 43262358 - 43262417
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttac 67  Q
    ||||||||||||||| ||| |||||||||||||||| | | |||||||||||||||||||    
T  43262358 agagaattgttgttctcacattacataaggctgtgccacacgagtaaatgacgtttttac 43262417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 39601695 - 39601650
Alignment:
Q  138 taaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  39601695 taaaaacgtcatttactcgtgtggcacagccttatgtaatgtggga 39601650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 39939298 - 39939342
Alignment:
Q  139 aaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  39939298 aaaaacgtcatttactcgtgtgacacatccttatgtaatgtggga 39939342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 39601638 - 39601696
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttac 67  Q
    |||||||| | ||||||| |||||||||||||||| | | |||||||||||||||||||    
T  39601638 gagaattgctattcccacattacataaggctgtgccacacgagtaaatgacgtttttac 39601696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 43262416 - 43262374
Alignment:
Q  138 taaaaacgtcatttactcgtgtgacacagacttatgtaatgtg 180  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  43262416 taaaaacgtcatttactcgtgtggcacagccttatgtaatgtg 43262374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 44052367 - 44052309
Alignment:
Q  7 aagagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||||||||||||||| |||||||||| ||||  | | |||||||||||||||||    
T  44052367 aagagaattgttgttcccacattacataaggttgtggcacacgagtaaatgacgttttt 44052309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 39604458 - 39604402
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||||||| ||||| |||||||||||||||| | | |||||| ||||||||||    
T  39604458 gagaattgttgtccccacattacataaggctgtgccacacgagtaattgacgttttt 39604402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 44052309 - 44052353
Alignment:
Q  139 aaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||    
T  44052309 aaaaacgtcatttactcgtgtgccacaaccttatgtaatgtggga 44052353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 39604402 - 39604445
Alignment:
Q  139 aaaaacgtcatttactcgtgtgacacagacttatgtaatgtggg 182  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||    
T  39604402 aaaaacgtcaattactcgtgtggcacagccttatgtaatgtggg 39604445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 34366930 - 34366858
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  ||||||||| || ||||  ||||| ||| |||||||||||| ||||| ||||||||||||||||    
T  34366930 aaacttcggcagttaactgacg-aggggcaaaaaggtcttttactcgtgtggcacagccttatgtaatgtggga 34366858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 39939355 - 39939298
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||| |||||||||| |||||||||| ||||  | | |||||||||||||||||    
T  39939355 agagaattattgttcccacattacataaggatgtgtcacacgagtaaatgacgttttt 39939298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 41250126 - 41250198
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||| |||||||| ||| ||||  |||||||||| ||||||||||| ||||  |||||| |||||||||    
T  41250126 aaacttcgacagttaactaccg-aggggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgtggga 41250198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 34234592 - 34234540
Alignment:
Q  120 agttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttat 172  Q
    |||||||| |||  ||| ||||||||||||||||||||||| ||||| |||||    
T  34234592 agttaactaccgagggggtaaaaacgtcatttactcgtgtggcacagccttat 34234540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 34366846 - 34366902
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||| ||||||||| |||||||||||||||| | | ||||||| ||| |||||    
T  34366846 gagaattgatgttcccacattacataaggctgtgccacacgagtaaaagaccttttt 34366902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 11688031 - 11687933
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgca 107  Q
    |||||||| ||||||||| |||||||||||||||| | | |||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||    
T  11688031 gagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgtttttacccctgcggcagttaactaccgaagtttggaatcggctgca 11687933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 11687946 - 11688019
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  11687946 aaacttcggtagttaactgccgcaggggtaaaaacgtcatttactcgtgtggcacagccttatgtaatgtggga 11688019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 11687393 - 11687498
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| ||||||||| ||| |||| | ||||| | | |||||||||||||||||||  ||||||||||||||||| |||||||  ||||||||||||    
T  11687393 gagaattgctgttcccacattatataaagttgtgccacacgagtaaatgacgtttttacccctgcggcagttaactaccgaagtttaaaaccggctgcag 11687492  T
Q  109 taaact 114  Q
    | ||||    
T  11687493 ttaact 11687498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 11687479 - 11687405
Alignment:
Q  109 taaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||   |||| ||||||||||    
T  11687479 taaacttcggtagttaactgccgcaggggtaaaaacgtcatttactcgtgtggcacaactttatataatgtggga 11687405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 28362816 - 28362861
Alignment:
Q  138 taaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  28362816 taaaaacgtcatttactcgtgtggcacagccttatgtaatgtggga 28362861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 28362875 - 28362815
Alignment:
Q  7 aagagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttac 67  Q
    |||||||||| | ||||||| |||||||||||||||| | | |||||||||||||||||||    
T  28362875 aagagaattgctattcccacattacataaggctgtgccacacgagtaaatgacgtttttac 28362815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 29076377 - 29076450
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||| |||||||||||| ||||  |||||||||| ||||| ||||| ||||| |||||| || ||||||    
T  29076377 aaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacgtggga 29076450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 29109910 - 29109983
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||| |||||||||||| ||||  |||||||||| ||||| ||||| ||||| |||||| || ||||||    
T  29109910 aaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacgtggga 29109983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 29111350 - 29111423
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||| |||||||||||| ||||  |||||||||| ||||| ||||| ||||| |||||| || ||||||    
T  29111350 aaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacgtggga 29111423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 14012513 - 14012457
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||||||||||||| ||  |||||||||||| | | |||||||||||||||||    
T  14012513 gagaattgttgttcccacatttaataaggctgtgccacacgagtaaatgacgttttt 14012457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 29076462 - 29076387
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaact 84  Q
    ||||||||||||||||||||| ||||||||||||  | |  ||||| |||||||||| |  || ||||||||||||    
T  29076462 gagaattgttgttcccacgttgcataaggctgtggcacacaagtaattgacgtttttgccccttcggcagttaact 29076387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 29109995 - 29109920
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaact 84  Q
    ||||||||||||||||||||| ||||||||||||  | |  ||||| |||||||||| |  || ||||||||||||    
T  29109995 gagaattgttgttcccacgttgcataaggctgtggcacacaagtaattgacgtttttgccccttcggcagttaact 29109920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 29111435 - 29111360
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaact 84  Q
    ||||||||||||||||||||| ||||||||||||  | |  ||||| |||||||||| |  || ||||||||||||    
T  29111435 gagaattgttgttcccacgttgcataaggctgtggcacacaagtaattgacgtttttgccccttcggcagttaact 29111360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 3502720 - 3502761
Alignment:
Q  139 aaaaacgtcatttactcgtgtgacacagacttatgtaatgtg 180  Q
    |||||||||||||||||||||||||||  |||||| ||||||    
T  3502720 aaaaacgtcatttactcgtgtgacacaaccttatgaaatgtg 3502761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 14012429 - 14012501
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  |||||||||| | ||||  |||||||||||||||||||||| ||||| |||||  |||||||||    
T  14012429 aaacttcggcagttaactgctgaagggc-aaaaacgtcatttactcgtgtggcacagccttattaaatgtggga 14012501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 40323770 - 40323665
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| ||||||||| |||||||||||||||| | |  |||||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||    
T  40323770 gagaattgctgttcccacattacataaggctgtgccacacaagtaaatgacgtttttgcccctgcggcagttaactaccgaagtttggaaccggctgcag 40323671  T
Q  109 taaact 114  Q
    | ||||    
T  40323670 ttaact 40323665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 36185697 - 36185590
Alignment:
Q  7 aagagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgc 106  Q
    |||||||||| |||| |||| |||||||||||||||| | | ||||||||||||||||| |  ||||||||||| ||||| ||| |||||||||||||||    
T  36185697 aagagaattgctgtttccacattacataaggctgtgccacacgagtaaatgacgtttttgcccctgcggcagttcactaccgaaatttggaaccggctgc 36185598  T
Q  107 agtaaact 114  Q
    ||| ||||    
T  36185597 agttaact 36185590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 40323685 - 40323758
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| ||||||||||||||||||  |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  40323685 aaacttcggtagttaactgccgcaggggcaaaaacgtcatttacttgtgtggcacagccttatgtaatgtggga 40323758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 40323202 - 40323284
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaag 91  Q
    |||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||| |  |||||||| |||||||| ||||    
T  40323202 gagaattgttgttcccacattacataaggctgtgccacatgagtaaatgacatttttgcccctgcggcaattaactaccgaag 40323284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 36185614 - 36185681
Alignment:
Q  114 ttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtgg 181  Q
    |||| |||| |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  36185614 ttcggtagtgaactgccgcaggggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtgg 36185681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 36185124 - 36185220
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgc 106  Q
    |||||||| | ||||||| || ||||||| ||||| | | ||||||||||  |||||||  ||||||||||||||||| |||||||||||||||||||    
T  36185124 gagaattgcttttcccacattccataaggttgtgccacacgagtaaatgatatttttacc-ctgcggcagttaactaccgaagtttggaaccggctgc 36185220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 40323284 - 40323214
Alignment:
Q  113 cttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||| ||||||| ||||||||||  ||||| ||||||||||| |||| ||||| ||||||||||||||||    
T  40323284 cttcggtagttaattgccgcaggggcaaaaatgtcatttactcatgtggcacagccttatgtaatgtggga 40323214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 36185208 - 36185136
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| |||||||||||||||||| ||||||  ||||||||||||||| ||||  |||||| |||||||||    
T  36185208 aaacttcggtagttaactgccgcaggg-taaaaatatcatttactcgtgtggcacaaccttatggaatgtggga 36185136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 48194712 - 48194656
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||| ||||||||| ||||||||||||||| || | |||||||||||||||||    
T  48194712 gagaattgctgttcccacattacataaggctgtgatacacgagtaaatgacgttttt 48194656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 46738736 - 46738792
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||||||||||||| |||||||||| ||||| | | ||| |||||||||||||    
T  46738736 gagaattgttgttcccacattacataaggttgtgccacacgagcaaatgacgttttt 46738792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 48194656 - 48194700
Alignment:
Q  139 aaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||    
T  48194656 aaaaacgtcatttactcgtgtatcacagccttatgtaatgtggga 48194700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 31873896 - 31873855
Alignment:
Q  73 cggcagttaactactgaagtttggaaccggctgcagtaaact 114  Q
    |||||||||||||| || ||||||||||||||||||| ||||    
T  31873896 cggcagttaactaccgatgtttggaaccggctgcagttaact 31873855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 46738821 - 46738748
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  ||||||||||||   ||  ||||||||||||| |||||||| ||||  ||||||||||||||||    
T  46738821 aaacttcggcagttaactgccgagagggcaaaaacgtcatttgctcgtgtggcacaaccttatgtaatgtggga 46738748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 31873396 - 31873440
Alignment:
Q  70 ctgcggcagttaactactgaagtttggaaccggctgcagtaaact 114  Q
    ||||||||||||||||| ||||||| |||||| ||||||| ||||    
T  31873396 ctgcggcagttaactaccgaagtttagaaccgactgcagttaact 31873440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 46740632 - 46740576
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||||||||||||| ||  |||||||||||  | | |||||||||||||||||    
T  46740632 gagaattgttgttcccacatttgataaggctgtgacacaagagtaaatgacgttttt 46740576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 5136520 - 5136625
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||||||||||||| ||||||||| |||||| | |  |||||||||||||||| |  ||||| ||||||||||| ||| |||||||||||||||||    
T  5136520 gagaattgttgttcccacattacataagactgtgccacacaagtaaatgacgtttttgcccctgcgacagttaactaccgaaatttggaaccggctgcag 5136619  T
Q  109 taaact 114  Q
    | ||||    
T  5136620 ttaact 5136625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 13742683 - 13742788
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| ||||||||| ||||| ||| || ||| ||| || ||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||    
T  13742683 gagaattgctgttcccacattacaaaagactatgccatacgaataaatgacgtttttactcctgcgacagttaactaccgaagtttgaaaccggctgcag 13742782  T
Q  109 taaact 114  Q
    | ||||    
T  13742783 ttaact 13742788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 44687588 - 44687485
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||||||||||||| |||||||||  ||||| |   ||||||||||||||||| | |||||| ||||||||||| ||||||| |||| ||||||||    
T  44687588 gagaattgttgttcccacattacataagattgtgccac--gagtaaatgacgtttttgcctctgcgacagttaactaccgaagtttagaactggctgcag 44687491  T
Q  109 taaact 114  Q
    | ||||    
T  44687490 ttaact 44687485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 5138406 - 5138301
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcag 108  Q
    |||||||| ||||||||| | |||||||||||||| | | ||||||||||||||||| |  || || ||||||||||| ||||||||||||| ||| |||    
T  5138406 gagaattgctgttcccacatgacataaggctgtgccacacgagtaaatgacgtttttgcccctacgacagttaactaccgaagtttggaaccagctacag 5138307  T
Q  109 taaact 114  Q
    | ||||    
T  5138306 ttaact 5138301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 33305076 - 33304999
Alignment:
Q  32 ataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagtttggaaccggctgcagt 109  Q
    |||||| ||||| ||| |||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||    
T  33305076 ataaggttgtgccatacgagtaaatgacgtttttgtccctgcggcagttaactaccgaagtttggaaccggctgcagt 33304999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 5136601 - 5136532
Alignment:
Q  114 ttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||| |||||||||| |||||||  |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  5136601 ttcggtagttaactgtcgcaggggcaaaaacgtcatttacttgtgtggcacagtcttatgtaatgtggga 5136532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 5138321 - 5138394
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| |||||||||| || ||||  |||||||||||||||||||||| ||||| ||||||| ||||||||    
T  5138321 aaacttcggtagttaactgtcgtaggggcaaaaacgtcatttactcgtgtggcacagccttatgtcatgtggga 5138394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 13743160 - 13743232
Alignment:
Q  111 aacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||  ||||||||| |||||||  |||||||||||||||||||| ||||||  ||||||||||||||||    
T  13743160 aacttcgggagttaactgtcgcaggggcaaaaacgtcatttactcgtgagacacaatcttatgtaatgtggga 13743232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 1388244 - 1388131
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttac-------ttctgcggcagttaactactgaagtttggaacc 100  Q
    ||||||||||||||||||| |||||||||||||||| | |  |||||||||| ||||| |         ||||||||||||||||| ||||||||||| |    
T  1388244 agagaattgttgttcccacattacataaggctgtgccacacaagtaaatgacatttttgcccctgcaagctgcggcagttaactaccgaagtttggaatc 1388145  T
Q  101 ggctgcagtaaact 114  Q
    ||||||||| ||||    
T  1388144 ggctgcagttaact 1388131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 33305014 - 33305061
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgt 157  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  33305014 aaacttcggtagttaactgccgcagggacaaaaacgtcatttactcgt 33305061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 43478971 - 43478884
Alignment:
Q  7 aagagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagttt 94  Q
    |||||||||||||||||||| |||||||||| ||||| | | |||||||||| ||||||    |  |||||||||||| |||||||||    
T  43478971 aagagaattgttgttcccacattacataaggttgtgccacacgagtaaatgatgtttttgtcccctcggcagttaactgctgaagttt 43478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 43478894 - 43478957
Alignment:
Q  120 agttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||||||  |||| |||||| ||||||||||||||| ||||  ||||||||||||||||    
T  43478894 agttaactgccgaggggacaaaaacatcatttactcgtgtggcacaaccttatgtaatgtggga 43478957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 13742768 - 13742695
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||| |||||||||| ||||||  ||||||||||||||| |||| || || || ||| ||||||||||||    
T  13742768 aaacttcggtagttaactgtcgcaggagtaaaaacgtcatttattcgtatggcatagtcttttgtaatgtggga 13742695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 43476125 - 43476181
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||||||||| ||| |||||||||| ||||| | | |||||||||||||||||    
T  43476125 gagaattgttgttctcacattacataaggttgtgccacacgagtaaatgacgttttt 43476181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 48251008 - 48250952
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||||||||||||| |||||||||| ||||| | || | ||||||||||||||    
T  48251008 gagaattgttgttcccacattacataaggttgtgccacataaataaatgacgttttt 48250952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 44687504 - 44687576
Alignment:
Q  109 taaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||| |||||||||| ||||| |  |||||||||||||||||  ||| ||||  ||||||||||||||||    
T  44687504 taaacttcggtagttaactgtcgcagaggcaaaaacgtcatttactc--gtggcacaatcttatgtaatgtggga 44687576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 43476210 - 43476140
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtg 180  Q
    ||||||||  |||||||| |||  |||  |||||||||||||||||||||| ||||  |||||||||||||    
T  43476210 aaacttcggcagttaacttccgagggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtg 43476140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 55385156 - 55385083
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||||||  ||||||||||||  |||  |||||||||| ||||||||||| ||||  |||||| |||||||||    
T  55385156 aaacttcggcagttaactgccgagggggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgtggga 55385083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 1388187 - 1388231
Alignment:
Q  139 aaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    ||||| |||||||||| ||||| ||||| ||||||||||||||||    
T  1388187 aaaaatgtcatttacttgtgtggcacagccttatgtaatgtggga 1388231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 46993310 - 46993254
Alignment:
Q  9 gagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    |||||||| ||||| ||| ||  |||||||||||| ||| |||||||||||||||||    
T  46993310 gagaattgctgttcacacatttgataaggctgtgccatacgagtaaatgacgttttt 46993254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 47070458 - 47070414
Alignment:
Q  139 aaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||||| ||||||||||| ||||| |||||| |||||||||    
T  47070458 aaaaacgtcaattactcgtgtgccacagtcttatgcaatgtggga 47070414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 54203496 - 54203540
Alignment:
Q  70 ctgcggcagttaactactgaagtttggaaccggctgcagtaaact 114  Q
    |||||||| ||||||||  ||||||||||||||||||||| ||||    
T  54203496 ctgcggcaattaactaccaaagtttggaaccggctgcagttaact 54203540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 51492005 - 51492080
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaact 84  Q
    ||||||||||||||||||| |||||||||| ||||| | | ||||||||||||||||| ||||| ||||| ||||||    
T  51492005 agagaattgttgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgcttct-cggcaattaact 51492080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 37015864 - 37015921
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    ||||||||||||||||||| |||||||||| ||||| | ||||||||||||| |||||    
T  37015864 agagaattgttgttcccacattacataaggatgtgccacatgagtaaatgacattttt 37015921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 44674098 - 44674155
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgttttt 65  Q
    ||||||||||||||||||| |||||||||| ||||| | | |||||||||||||||||    
T  44674098 agagaattgttgttcccacattacataaggttgtgccacacgagtaaatgacgttttt 44674155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 16983541 - 16983479
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttat 172  Q
    ||||||||  ||||||||||||  ||| ||||||||||||||||||||||| ||||| |||||    
T  16983541 aaacttcggcagttaactgccgagggggtaaaaacgtcatttactcgtgtggcacagccttat 16983479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 16984215 - 16984277
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttat 172  Q
    ||||||||  ||||||||||||  ||| ||||||||||||||||||||||| ||||| |||||    
T  16984215 aaacttcggcagttaactgccgagggggtaaaaacgtcatttactcgtgtggcacagccttat 16984277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 44674184 - 44674111
Alignment:
Q  109 taaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||||  |||||||||||  ||||  |||||||||||||||||||||| ||||  ||||||||||||||||    
T  44674184 taaacttcggcagttaactgcca-aggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtggga 44674111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 51492062 - 51492018
Alignment:
Q  139 aaaaacgtcatttactcgtgtgacacagacttatgtaatgtggga 183  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||    
T  51492062 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtggga 51492018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 39590622 - 39590693
Alignment:
Q  110 aaacttcgatagttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtgg 181  Q
    ||||||||  ||||||||||||  |||  |||||| ||||||||||||||| ||||| ||||| ||||||||    
T  39590622 aaacttcggcagttaactgccgagggggcaaaaacatcatttactcgtgtggcacagccttatataatgtgg 39590693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 16983455 - 16983541
Alignment:
Q  8 agagaattgttgttcccacgttacataaggctgtgctatatgagtaaatgacgtttttacttctgcggcagttaactactgaagttt 94  Q
    ||||||||||||||  ||| ||  |||||||||||| | | |||||||||||||||||||  |  |||||||||||| | |||||||    
T  16983455 agagaattgttgtttacacatttgataaggctgtgccacacgagtaaatgacgtttttaccccctcggcagttaactgccgaagttt 16983541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 39588101 - 39588056
Alignment:
Q  120 agttaactgccgcagggataaaaacgtcatttactcgtgtgacaca 165  Q
    ||||||||||||  |||  |||||||||||||||||||||||||||    
T  39588101 agttaactgccgagggggcaaaaacgtcatttactcgtgtgacaca 39588056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 37959784 - 37959844
Alignment:
Q  120 agttaactgccgcagggataaaaacgtcatttactcgtgtgacacagacttatgtaatgtg 180  Q
    ||||||||||||  ||| |||||||||  |||||||||||| | ||| |||||||||||||    
T  37959784 agttaactgccgagggggtaaaaacgtattttactcgtgtgcctcagccttatgtaatgtg 37959844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 16888 - 16932
Alignment:
Q  70 ctgcggcagttaactactgaagtttggaaccggctgcagtaaact 114  Q
    |||||| |||||||||| ||||||||||||||| |||||| ||||    
T  16888 ctgcggtagttaactaccgaagtttggaaccggttgcagttaact 16932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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