View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_46 (Length: 256)
Name: NF11008_low_46
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 41756760 - 41756529
Alignment:
| Q |
18 |
acatacccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatg |
117 |
Q |
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| T |
41756760 |
acatacccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatg |
41756661 |
T |
|
| Q |
118 |
gttttccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756660 |
gttttccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcgg |
41756561 |
T |
|
| Q |
218 |
ggtctcttgttcgaaatcgatcattcatctca |
249 |
Q |
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| T |
41756560 |
ggtctcttgttcgaaatcgatcattcatctca |
41756529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 41764699 - 41764492
Alignment:
| Q |
21 |
tacccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggtt |
120 |
Q |
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| T |
41764699 |
tacccaatcatggcaagcaagtatgaaatgatcagctccatgacttcggttccaatagggatatttttcggaaaggacattgatgtagtctttgacggtt |
41764600 |
T |
|
| Q |
121 |
ttccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggt |
220 |
Q |
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| T |
41764599 |
atccttaagaggtcataagcacgagagtctcgtacatagacataatggaccatcattgctacactataagaaaggaaaaatacatgtgccttctcagggt |
41764500 |
T |
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| Q |
221 |
ctcttgtt |
228 |
Q |
| |
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| T |
41764499 |
cttttgtt |
41764492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 26973807 - 26974029
Alignment:
| Q |
22 |
acccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttt |
121 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||| | | || |||||||||||||| |||| |||| |
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| T |
26973807 |
acccagtcatggcaagctagcatgaaatgatcagctccaaggcttctattccaatatggatattttccagcaatgacattgatataatccgtgacagttt |
26973906 |
T |
|
| Q |
122 |
tccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggtc |
221 |
Q |
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| ||||| || | ||| ||| |||| || | || ||| || ||| |||||| | || ||||||| || ||||||||| | || ||||| |||| || || |
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| T |
26973907 |
ttcttataggtccaaagtcacgagagtcccttaaataaacgaatcggaccaacattaccacactgaacggaaggaaatagacgtgtgctttctgaggatc |
26974006 |
T |
|
| Q |
222 |
tcttgttcgaaatcgatcattca |
244 |
Q |
| |
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||| |||| |||| | ||||||| |
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|
| T |
26974007 |
tctagttctaaattggtcattca |
26974029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 36806159 - 36806120
Alignment:
| Q |
21 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
60 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
36806159 |
tacccaatcatgacaagaaagcatgaaatgatcagctcca |
36806120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 36515067 - 36515106
Alignment:
| Q |
21 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
60 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||| |
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| T |
36515067 |
tacccaatcatgacaagaaagcatgaaatggtcagctcca |
36515106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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