View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_48 (Length: 252)
Name: NF11008_low_48
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_48 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 11624679 - 11624918
Alignment:
| Q |
13 |
cagagatggtgatgtggcgataatgtgacgaagagttgttcttattttttcttcttcctgcacccaccggaacatttctcatggttccgcctgcagtcca |
112 |
Q |
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| T |
11624679 |
cagagatggtgatgtggcgataatgcgacgaagagttgttcttattttttcttcttcctgcacccaccggaacatttctcatggttccacctgcagtcca |
11624778 |
T |
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| Q |
113 |
atatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgctgttgcagcgtggacacagg |
212 |
Q |
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| T |
11624779 |
atatctttgacacgccttgcagaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgctgttgcagcgtggacacagg |
11624878 |
T |
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| Q |
213 |
agtaatttgtctggtttctttaatgttttctcttgagtat |
252 |
Q |
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| T |
11624879 |
agtaatttgtctggtttctttagtgttttctcttgagtat |
11624918 |
T |
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 188
Target Start/End: Complemental strand, 31771910 - 31771803
Alignment:
| Q |
81 |
ggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaact |
180 |
Q |
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| T |
31771910 |
ggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaacaaaatt |
31771811 |
T |
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| Q |
181 |
ttgtgtcc |
188 |
Q |
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| T |
31771810 |
tggtgtcc |
31771803 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 2823737 - 2823621
Alignment:
| Q |
72 |
gcacccaccggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagt |
171 |
Q |
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| T |
2823737 |
gcacctaccggtacgtttctcatggttccaccggcagtccaatatctctggcagttcttgcagaaatgacggggttggttgacattgtaattattatagt |
2823638 |
T |
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| Q |
172 |
aacagaactttgtgtcc |
188 |
Q |
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| T |
2823637 |
agcagaacttcgtgtcc |
2823621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 18193495 - 18193381
Alignment:
| Q |
94 |
tggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgct |
193 |
Q |
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| T |
18193495 |
tggttcctccggcagtccaatatctctgacagtttttgcagaagtgtcggggctggttggcgttgtaattattgtagtaacaaaattttgtgtctacgct |
18193396 |
T |
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| Q |
194 |
gttgcagcgtggaca |
208 |
Q |
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| T |
18193395 |
tttgcatcttggaca |
18193381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 18188204 - 18188160
Alignment:
| Q |
144 |
ggctgattgacgttgtaattattgtagtaacagaactttgtgtcc |
188 |
Q |
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| T |
18188204 |
ggctggttggcgttgtaattattgtagtaacaaaattttgtgtcc |
18188160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 188
Target Start/End: Complemental strand, 3775700 - 3775596
Alignment:
| Q |
84 |
acatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttg |
183 |
Q |
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| T |
3775700 |
acatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaacattgtagttattgtagtagcagaatttgg |
3775601 |
T |
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| Q |
184 |
tgtcc |
188 |
Q |
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||||| |
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| T |
3775600 |
tgtcc |
3775596 |
T |
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