View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_53 (Length: 247)
Name: NF11008_low_53
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 41130160 - 41129939
Alignment:
| Q |
19 |
atgcagatcccttgtattggccaacatttgttgtggctattggtgctgccattatagctagtcaggcaatgatttcaggagcattttccattatatcaca |
118 |
Q |
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| T |
41130160 |
atgcagatcccttgtattggccaacatttgttgtggctattggtgctgccattatagctagtcaggcaatgatttcaggagcattttccattatatcaca |
41130061 |
T |
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| Q |
119 |
agcccttagtctaggttgtttccctagagtcaaggttgttcatacttcagctaagcatgaaggtcaagtttatattccagagatcaactacatgttcttg |
218 |
Q |
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| T |
41130060 |
agcccttagtttaggttgtttccctagagtcaaggttgttcatacttcagctaaccatgaaggtcaagtttatattccagagatcaactacatgttcttg |
41129961 |
T |
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| Q |
219 |
attggatgtattgtagtctgtg |
240 |
Q |
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| T |
41129960 |
attggatgtattgtagtttgtg |
41129939 |
T |
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Back To:
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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 7800916 - 7801091
Alignment:
| Q |
30 |
ttgtattggccaacatttgttgtggctattggtgctgccattatagctagtcaggcaatgatttcaggagcattttccattatatcacaagcccttagtc |
129 |
Q |
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| T |
7800916 |
ttgtattggccaacatttgttgttgcggttgttgcttccatcatagctagccaagcaatagtttccgcagcattttccattatatctcaagctttaagta |
7801015 |
T |
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| Q |
130 |
taggttgtttccctagagtcaaggttgttcatacttcagctaagcatgaaggtcaagtttatattccagagatcaa |
205 |
Q |
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| T |
7801016 |
tgggttgtttcccaagggttaaggttgtgcacacttctaccaaacatcaaggccaagtttatattcctgaaatcaa |
7801091 |
T |
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