View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_54 (Length: 247)
Name: NF11008_low_54
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_54 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4528694 - 4528462
Alignment:
| Q |
1 |
tcaatgaacttgaaaacaagatcaaggctttggaaaaatcttctgaggacaatggcatcaaggctctgactaagcatgaactagcccttcaagagtttct |
100 |
Q |
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| T |
4528694 |
tcaatgaacttgaaaacaagatcaaggctttggaaaaatcttctgaggacaatgacatcaaggctccgactaagcatgaactagcccttcaagagtttct |
4528595 |
T |
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| Q |
101 |
agccaattccattggaagaagcaggttagcatctatgatttatggtctaagcagaaatcatggagaaggaattggtttttcagaagcaccttgtaagatg |
200 |
Q |
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| T |
4528594 |
agccaattccattggaagaagcaagttagcatctatgatttatggtctaagcaaaaatcatggagaaggaattggtttttcagaagcaccttgtaagatg |
4528495 |
T |
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| Q |
201 |
atgttgactttagaaaaatcaatgaatccttct |
233 |
Q |
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| T |
4528494 |
atgttgactttagaaaaatcaatgaatccttct |
4528462 |
T |
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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 5617907 - 5618029
Alignment:
| Q |
63 |
gctctgactaagcatgaactagcccttcaagagtttctagccaattccattggaagaagcaggttagcatctatgatttatggtctaagcagaaatcatg |
162 |
Q |
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| T |
5617907 |
gctctaactatgcatgaactagcccttcaagattttctagctaattccattggaagaagcaacctagcttctatgacttatggtgtaagcggaaacaatg |
5618006 |
T |
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| Q |
163 |
gagaaggaattggtttttcagaa |
185 |
Q |
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| T |
5618007 |
gagaaataattgatttttcagaa |
5618029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 70208 - 70070
Alignment:
| Q |
5 |
tgaacttgaaaacaagatcaaggctttggaaaaatcttctgaggacaatggcatcaaggctctgactaagcatgaactagcccttcaagagtttctagcc |
104 |
Q |
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| T |
70208 |
tgaacttgaaatcaaaatcaaggttttggaagaagcttttaagaaaaacttcatcaaggctttgacaaagcatgaactagtctttcaagattttctagct |
70109 |
T |
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| Q |
105 |
aattccattggaagaagcaggttagcatctatgatttat |
143 |
Q |
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| T |
70108 |
agttctattggaagaaccagattagcctttatgatttat |
70070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 26010542 - 26010461
Alignment:
| Q |
114 |
ggaagaagcaggttagcatctatgatttatggtctaagcagaaatcatggagaaggaattggtttttcagaagcaccttgta |
195 |
Q |
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| T |
26010542 |
ggaagaagcagattagcttctatgatttatggtgtaagcataaaccatggtgaagggattggtttttcaagaacaccttgta |
26010461 |
T |
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