View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_57 (Length: 238)
Name: NF11008_low_57
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 3710181 - 3710075
Alignment:
| Q |
25 |
taagattagagttctat--taagtaaacaagaccattattcgtaactgagatatgtctactttgttaaatgtgaacataaacctcaaattattattgaat |
122 |
Q |
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| T |
3710181 |
taagattagagttctatattaggtaaacaagaccattattcaaaactaagatatgtctactttgttaaatgtgaacataaacctcaaattattattcaat |
3710082 |
T |
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| Q |
123 |
taggaac |
129 |
Q |
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| T |
3710081 |
taggaac |
3710075 |
T |
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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 3710077 - 3710006
Alignment:
| Q |
167 |
aaccttaatcgttttcattagaattaatttctcttttattttctttgcaaacaactcttacgcacaccaccc |
238 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3710077 |
aaccttaatcattttcattagaattaatttctcttttattttctttgcaaacaactcttacgcacaccaccc |
3710006 |
T |
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