View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_58 (Length: 232)
Name: NF11008_low_58
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 47710455 - 47710620
Alignment:
| Q |
16 |
atgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttcctttaattgctaaaactt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47710455 |
atgaacctcaatatgcttgagaaattaaattattaatcgcttcactaacaaaaatataaattagagcttctttgcaatcttcctttaattgctaaaactt |
47710554 |
T |
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| Q |
116 |
ctaa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagccactact |
177 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47710555 |
ctaatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagccactact |
47710620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 39492921 - 39493081
Alignment:
| Q |
16 |
atgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttcctttaattgctaaaactt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39492921 |
atgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagcttctttgcaatcttcctttaattgctaaaactt |
39493020 |
T |
|
| Q |
116 |
ctaa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
172 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39493021 |
ctaatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
39493081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 35839339 - 35839179
Alignment:
| Q |
16 |
atgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttcctttaattgctaaaactt |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35839339 |
atgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagcttctttgcaatcttcctttaattgctaaaactt |
35839240 |
T |
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| Q |
116 |
ctaa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
172 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35839239 |
ctaatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
35839179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 44356339 - 44356382
Alignment:
| Q |
172 |
actacttcctttgttattttaccttgtaccaagtgagagtaact |
215 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
44356339 |
actacttcctgttttattttaccttgtaccaagtgagagtaact |
44356382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 5031433 - 5031464
Alignment:
| Q |
16 |
atgaacctcaatatgcttgagaaattaaatta |
47 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5031433 |
atgaacctcaatatgcttgagaaattaaatta |
5031464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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