View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_6 (Length: 559)
Name: NF11008_low_6
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 54294361 - 54293840
Alignment:
| Q |
19 |
attacacagttattacggaatgaaatataagcaaaagtggtatgtgaaaagttgattatgtgatttaaaattaagaccagatattttttaggaaccatgt |
118 |
Q |
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| T |
54294361 |
attacacagttattacggaatgaaatataagcaaaagtggtatgtgaaaagttgattatgtgatttaaaattaagaccagatattttttaggaaccatgt |
54294262 |
T |
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| Q |
119 |
ttgcttgtatttcatgtctgagggagtagagtactttcctacttcttaataatacaaatttccatgtgtcaattggagcnnnnnnn-attcccaaattat |
217 |
Q |
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| T |
54294261 |
ttgcttgtatttcatttctgagggagtagagtactttcctacttcttaataatacaaatttccatgtgtcaattggagcttttttttattcccaaattat |
54294162 |
T |
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| Q |
218 |
attatgccttaaacatggtttaggttttgagaacgactggttttatacattgagaggatagttttgacttttgattgatgaactggaaggaatgacacaa |
317 |
Q |
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| T |
54294161 |
attatgccttaaacatggtttaggttttgagaacgactggttttatacattgagaggatagttttgacttttgattgatgaactggaaggaatgacacaa |
54294062 |
T |
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| Q |
318 |
tcttgttcattgagaggatagtttgagtgatgaattgggatcaaagattgccctttagtttgactagattctgattcataggagcaatatgttctgatct |
417 |
Q |
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| T |
54294061 |
tcttgttcattgagaggatagtttgagtgatgaattgggatcaaagatttccctttagtttgactagattctgattcataggagcaatatgttctgatct |
54293962 |
T |
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| Q |
418 |
ttgatttaattttcagttttaatatgcttaaggtataagttgttagatttgaaatgtgtgtttagattctctgcagttactatagaattcaaactgtttt |
517 |
Q |
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| T |
54293961 |
ttgatttaattttcagttttaatatgcttaaggtataagttgttagatttgaaatgtgtgtttagattctctgcagttactatagaattcaaactgtttt |
54293862 |
T |
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| Q |
518 |
tcgcttaaatccaatggctctg |
539 |
Q |
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| T |
54293861 |
tcacttaaatccaatggctctg |
54293840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 17758669 - 17758613
Alignment:
| Q |
37 |
aatgaaatataagcaaaagtggtatgtgaaaagttgattatgtgatttaaaattaag |
93 |
Q |
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| T |
17758669 |
aatgaaatataagccaaaatggtagttgataagttgattatgtggtttaaaattaag |
17758613 |
T |
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