View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11008_low_60 (Length: 204)
Name: NF11008_low_60
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11008_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 52368284 - 52368456
Alignment:
| Q |
18 |
agataattaacattagatactataagataagatagg---cttaaaatccaaaattgagattgctcatatagataacttactggtccaagatatttaatgc |
114 |
Q |
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| T |
52368284 |
agataattaacattagatactataagataagataggaggcttaaaatccaaaattgagattgctcatatagataacttactggtccaagatatttaatgc |
52368383 |
T |
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| Q |
115 |
attgccgttgtagaacagtgcttcttggacatttctcaagatttatttcttttccatctccaacatccaacct |
187 |
Q |
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| T |
52368384 |
attgccgttgtagaacagtgcttcttggacatttctcaagatttatttcttttccatctccaacatccaacct |
52368456 |
T |
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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 17493365 - 17493266
Alignment:
| Q |
85 |
gataacttactggtccaagatatttaatgcattgccgttgtagaacagtgcttcttggacatttctcaagatttatttcttttccatctccaacatccaa |
184 |
Q |
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| T |
17493365 |
gataacttactggtccaagatatttaatgcactggcgttgaagg---gtggcccttggacatttctcaagattaatttctttaccatctccaacatccaa |
17493269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 6004582 - 6004632
Alignment:
| Q |
137 |
tcttggacatttctcaagatttatttcttttccatctccaacatccaacct |
187 |
Q |
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| T |
6004582 |
tcttgtacacttatcaagatttacttcttttccatctccaacatccaacct |
6004632 |
T |
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