View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11008_low_7 (Length: 549)

Name: NF11008_low_7
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11008_low_7
NF11008_low_7
[»] chr7 (31 HSPs)
chr7 (276-396)||(9454806-9454926)
chr7 (196-260)||(17066425-17066489)
chr7 (196-260)||(32197904-32197968)
chr7 (196-260)||(12933419-12933483)
chr7 (196-260)||(31848139-31848203)
chr7 (199-260)||(38742184-38742245)
chr7 (196-260)||(24195607-24195671)
chr7 (276-396)||(32197744-32197864)
chr7 (276-396)||(39619629-39619749)
chr7 (197-260)||(31489930-31489993)
chr7 (199-260)||(11217066-11217127)
chr7 (199-260)||(12385702-12385763)
chr7 (199-256)||(32544773-32544830)
chr7 (196-260)||(5611502-5611566)
chr7 (196-260)||(24197098-24197162)
chr7 (196-260)||(35212068-35212132)
chr7 (276-396)||(41693749-41693869)
chr7 (197-260)||(31853549-31853612)
chr7 (196-259)||(41694951-41695014)
chr7 (199-260)||(43066004-43066065)
chr7 (196-260)||(13418950-13419014)
chr7 (199-255)||(32543483-32543539)
chr7 (196-256)||(42254958-42255018)
chr7 (195-257)||(9454114-9454176)
chr7 (196-246)||(39619800-39619850)
chr7 (195-248)||(36748197-36748249)
chr7 (196-248)||(554245-554297)
chr7 (450-482)||(9454725-9454757)
chr7 (196-260)||(25046235-25046299)
chr7 (276-396)||(31489772-31489892)
chr7 (196-256)||(41693645-41693705)
[»] chr3 (45 HSPs)
chr3 (276-396)||(43641246-43641366)
chr3 (295-396)||(50563646-50563747)
chr3 (276-396)||(52402959-52403079)
chr3 (181-260)||(22508720-22508799)
chr3 (185-260)||(43641132-43641207)
chr3 (196-260)||(39820599-39820663)
chr3 (195-257)||(52708615-52708677)
chr3 (195-260)||(977841-977906)
chr3 (196-260)||(45268565-45268629)
chr3 (196-260)||(53121302-53121366)
chr3 (196-260)||(53122466-53122530)
chr3 (196-255)||(52403124-52403183)
chr3 (198-260)||(20488368-20488430)
chr3 (198-260)||(39819314-39819376)
chr3 (196-257)||(42447785-42447846)
chr3 (196-260)||(46027412-46027476)
chr3 (196-260)||(47433804-47433868)
chr3 (196-256)||(52401017-52401077)
chr3 (197-260)||(20489353-20489416)
chr3 (196-247)||(42446526-42446577)
chr3 (282-356)||(20585400-20585474)
chr3 (195-255)||(4705680-4705740)
chr3 (196-248)||(40477381-40477433)
chr3 (196-248)||(46026076-46026128)
chr3 (195-255)||(48033057-48033117)
chr3 (200-255)||(11914833-11914888)
chr3 (197-260)||(40476222-40476285)
chr3 (196-255)||(46104343-46104402)
chr3 (197-255)||(32637188-32637246)
chr3 (197-255)||(45267306-45267364)
chr3 (276-366)||(50563024-50563114)
chr3 (195-260)||(9855177-9855242)
chr3 (276-349)||(42447670-42447743)
chr3 (276-349)||(46104440-46104513)
chr3 (186-226)||(13584337-13584377)
chr3 (196-248)||(20585651-20585703)
chr3 (196-244)||(20802848-20802896)
chr3 (196-256)||(32635594-32635654)
chr3 (196-260)||(34238851-34238915)
chr3 (196-248)||(38505586-38505638)
chr3 (450-482)||(43641404-43641436)
chr3 (196-260)||(44506582-44506646)
chr3 (450-482)||(50563562-50563594)
chr3 (196-260)||(51834878-51834942)
chr3 (196-248)||(54437474-54437526)
[»] chr8 (34 HSPs)
chr8 (276-396)||(45517797-45517917)
chr8 (195-255)||(4183979-4184039)
chr8 (196-260)||(10717121-10717185)
chr8 (197-260)||(28996835-28996898)
chr8 (196-260)||(36588222-36588286)
chr8 (196-260)||(36589382-36589446)
chr8 (196-255)||(10718448-10718507)
chr8 (196-257)||(22534720-22534781)
chr8 (195-260)||(28997988-28998053)
chr8 (196-260)||(22272265-22272329)
chr8 (196-260)||(22533317-22533381)
chr8 (196-260)||(30124218-30124282)
chr8 (197-260)||(4182623-4182686)
chr8 (199-260)||(41846650-41846711)
chr8 (196-253)||(45517962-45518019)
chr8 (276-356)||(22534598-22534678)
chr8 (196-260)||(38456725-38456789)
chr8 (196-260)||(38658481-38658545)
chr8 (196-260)||(1420437-1420501)
chr8 (285-393)||(10718285-10718393)
chr8 (196-260)||(14197825-14197889)
chr8 (196-260)||(22270943-22271007)
chr8 (196-248)||(41847187-41847239)
chr8 (197-260)||(39440417-39440480)
chr8 (198-248)||(3483635-3483685)
chr8 (198-260)||(45516399-45516461)
chr8 (195-260)||(297114-297178)
chr8 (276-317)||(4183894-4183935)
chr8 (195-248)||(14712784-14712837)
chr8 (196-260)||(1376935-1376999)
chr8 (196-260)||(1385550-1385614)
chr8 (196-260)||(1526108-1526172)
chr8 (196-260)||(10292816-10292880)
chr8 (196-260)||(39439924-39439988)
[»] scaffold0230 (1 HSPs)
scaffold0230 (196-260)||(426-490)
[»] scaffold0106 (2 HSPs)
scaffold0106 (196-260)||(30902-30966)
scaffold0106 (196-260)||(29729-29793)
[»] chr6 (24 HSPs)
chr6 (196-260)||(18810532-18810596)
chr6 (195-260)||(20897492-20897557)
chr6 (276-396)||(17516265-17516385)
chr6 (196-260)||(34998136-34998200)
chr6 (83-191)||(14120640-14120747)
chr6 (195-255)||(21165245-21165305)
chr6 (196-260)||(21953206-21953270)
chr6 (195-248)||(17000284-17000337)
chr6 (199-248)||(20391217-20391266)
chr6 (196-260)||(16995451-16995515)
chr6 (196-260)||(17517304-17517368)
chr6 (198-248)||(17516164-17516214)
chr6 (195-260)||(1972399-1972464)
chr6 (276-317)||(17000192-17000233)
chr6 (195-260)||(20393263-20393328)
chr6 (196-248)||(29291359-29291411)
chr6 (196-260)||(34995114-34995178)
chr6 (198-260)||(30253534-30253596)
chr6 (276-317)||(16995555-16995596)
chr6 (197-226)||(34989962-34989991)
chr6 (196-260)||(3276367-3276431)
chr6 (165-193)||(10805373-10805401)
chr6 (196-260)||(14655379-14655443)
chr6 (190-226)||(19296377-19296413)
[»] chr1 (43 HSPs)
chr1 (196-260)||(9774883-9774947)
chr1 (196-257)||(34934745-34934806)
chr1 (195-260)||(37396835-37396900)
chr1 (276-396)||(24610022-24610142)
chr1 (196-260)||(27264211-27264275)
chr1 (196-260)||(35911883-35911947)
chr1 (196-260)||(47038866-47038930)
chr1 (195-260)||(20722471-20722536)
chr1 (195-260)||(30722115-30722180)
chr1 (195-260)||(46075045-46075110)
chr1 (196-260)||(17977554-17977618)
chr1 (276-396)||(24422618-24422738)
chr1 (196-260)||(27262908-27262972)
chr1 (196-260)||(39163019-39163083)
chr1 (196-254)||(50164403-50164461)
chr1 (335-396)||(35911724-35911785)
chr1 (196-260)||(2604122-2604186)
chr1 (196-260)||(35721101-35721165)
chr1 (189-256)||(23469968-23470035)
chr1 (358-396)||(34934583-34934621)
chr1 (195-260)||(11711249-11711313)
chr1 (195-260)||(17976760-17976825)
chr1 (195-260)||(24422514-24422579)
chr1 (276-393)||(27263011-27263128)
chr1 (276-349)||(30722219-30722292)
chr1 (276-396)||(24427205-24427325)
chr1 (196-248)||(24609919-24609971)
chr1 (276-396)||(35721201-35721321)
chr1 (196-256)||(37395633-37395693)
chr1 (196-248)||(48588968-48589020)
chr1 (201-260)||(27816715-27816774)
chr1 (197-260)||(48856213-48856276)
chr1 (196-258)||(20723685-20723747)
chr1 (196-258)||(24427366-24427428)
chr1 (77-151)||(31475162-31475236)
chr1 (195-255)||(39162822-39162883)
chr1 (276-313)||(46074972-46075009)
chr1 (199-255)||(9774040-9774096)
chr1 (196-260)||(11710553-11710617)
chr1 (196-256)||(26863860-26863920)
chr1 (196-260)||(27815441-27815505)
chr1 (196-260)||(35722280-35722344)
chr1 (196-256)||(46073885-46073945)
[»] scaffold0517 (2 HSPs)
scaffold0517 (195-260)||(10314-10379)
scaffold0517 (196-256)||(11521-11581)
[»] scaffold0001 (2 HSPs)
scaffold0001 (196-260)||(120980-121044)
scaffold0001 (195-255)||(119592-119652)
[»] chr5 (17 HSPs)
chr5 (196-260)||(3938055-3938119)
chr5 (196-258)||(3936578-3936640)
chr5 (196-260)||(4777640-4777704)
chr5 (196-260)||(27571124-27571188)
chr5 (196-255)||(4565393-4565452)
chr5 (198-260)||(3205097-3205159)
chr5 (276-385)||(35605418-35605527)
chr5 (196-260)||(3954052-3954116)
chr5 (196-260)||(34911823-34911887)
chr5 (196-260)||(39379546-39379610)
chr5 (184-226)||(2217824-2217866)
chr5 (184-226)||(40029467-40029509)
chr5 (195-260)||(6894005-6894070)
chr5 (198-255)||(25254131-25254188)
chr5 (198-255)||(25317921-25317978)
chr5 (196-248)||(15599765-15599817)
chr5 (196-260)||(38496718-38496782)
[»] chr4 (27 HSPs)
chr4 (196-260)||(45618285-45618349)
chr4 (185-260)||(41933807-41933882)
chr4 (195-260)||(22204054-22204119)
chr4 (195-260)||(22205217-22205282)
chr4 (195-260)||(42359341-42359406)
chr4 (196-260)||(17281571-17281635)
chr4 (196-260)||(17370073-17370137)
chr4 (196-260)||(54121695-54121759)
chr4 (196-258)||(29060879-29060941)
chr4 (196-258)||(45619728-45619790)
chr4 (195-260)||(19675615-19675680)
chr4 (196-256)||(3879086-3879146)
chr4 (196-260)||(3880491-3880555)
chr4 (196-260)||(38166495-38166559)
chr4 (196-255)||(19674414-19674473)
chr4 (196-258)||(33137225-33137287)
chr4 (195-248)||(32699321-32699374)
chr4 (196-255)||(40198577-40198633)
chr4 (276-340)||(3880389-3880453)
chr4 (199-247)||(35054665-35054713)
chr4 (196-260)||(42358032-42358096)
chr4 (195-246)||(44705298-44705349)
chr4 (199-260)||(16574363-16574424)
chr4 (198-247)||(16916069-16916118)
chr4 (199-255)||(17371845-17371901)
chr4 (196-248)||(34659706-34659758)
chr4 (199-247)||(41935078-41935126)
[»] chr2 (15 HSPs)
chr2 (195-258)||(1778787-1778850)
chr2 (196-255)||(25977870-25977929)
chr2 (195-260)||(2411261-2411326)
chr2 (196-260)||(1777469-1777533)
chr2 (196-260)||(2412423-2412487)
chr2 (196-256)||(11087049-11087109)
chr2 (196-260)||(25979246-25979310)
chr2 (196-260)||(23861752-23861816)
chr2 (196-256)||(30843644-30843704)
chr2 (276-393)||(1777572-1777689)
chr2 (276-317)||(25977973-25978014)
chr2 (199-260)||(36837773-36837834)
chr2 (198-260)||(21573938-21574000)
chr2 (186-260)||(43788848-43788922)
chr2 (196-260)||(24748212-24748275)
[»] scaffold0562 (1 HSPs)
scaffold0562 (196-256)||(9922-9982)
[»] scaffold0002 (4 HSPs)
scaffold0002 (196-260)||(344937-345001)
scaffold0002 (196-243)||(376381-376428)
scaffold0002 (195-248)||(374334-374387)
scaffold0002 (196-248)||(345904-345956)
[»] scaffold0009 (2 HSPs)
scaffold0009 (196-248)||(202579-202631)
scaffold0009 (276-314)||(202682-202720)
[»] scaffold0599 (1 HSPs)
scaffold0599 (200-255)||(6584-6639)
[»] scaffold0095 (1 HSPs)
scaffold0095 (197-260)||(42750-42813)
[»] scaffold0765 (1 HSPs)
scaffold0765 (199-260)||(1863-1924)


Alignment Details
Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 9454926 - 9454806
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    ||||||||||||| ||||| |||||||||||||||||||||| |  |  ||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  9454926 aaaatagtccctgaacccactttcttgctgatttggcacattttttctcatgtgataggtgctgactgtgtaaacttgtatatgtggcatccaagtggca 9454827  T
Q  376 attattttattttaactaatt 396  Q
    |||||||||||||||||||||    
T  9454826 attattttattttaactaatt 9454806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 17066425 - 17066489
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||||    
T  17066425 ggctaaaatatgcttttaatccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaa 17066489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 32197968 - 32197904
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| || || |||||||||||||||||||||||||||    
T  32197968 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgggttttggtccttggtaaaaaaa 32197904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 12933419 - 12933483
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| ||||||||||  ||||||||| |||||||||||    
T  12933419 ggctaaaatatgcttttggtccctgcaaatatagtgagtttgaattttggtccctggtaaaaaaa 12933483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 31848203 - 31848139
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||||||||||||||||| || || ||||||||||||||| |||||||||||    
T  31848203 ggctaaaatatgtttttagtccctgcaaatatagcgaatttgggttttggtccctggtaaaaaaa 31848139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 38742184 - 38742245
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||| |||||||||||||||||| || ||||||||||||||||||  ||||||||||    
T  38742184 taaaatatgtttttagtccctgcaaatatagcgagtttgggttttggtccccggtaaaaaaa 38742245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 24195607 - 24195671
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || |||||||||||||| ||| |||||||||||    
T  24195607 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttgctccctggtaaaaaaa 24195671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 32197864 - 32197744
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||||||| |||||||| | | ||||||| ||||||   |||||  ||| |  ||||||| ||| |||| ||||  ||||||||||| ||| ||    
T  32197864 aaaatagtccctggtcccattttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatccaggtgaca 32197765  T
Q  376 attattttattttaactaatt 396  Q
    |||||||||||||||||||||    
T  32197764 attattttattttaactaatt 32197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 39619749 - 39619629
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||| ||||| || ||||||  ||||||| ||||||   |||||||||| ||  ||||||| || |||||||||  |||| |||||| |||| |    
T  39619749 aaaatagtccttggactcactttcttaatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtggta 39619650  T
Q  376 attattttattttaactaatt 396  Q
    ||||||||||||||| |||||    
T  39619649 attattttattttaaataatt 39619629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 31489993 - 31489930
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||| |||| ||||||||||||| |  |||||||||||||||||||| |||||||||    
T  31489993 gctaaaatatgtttttggtccctgcaaatataacgagtttgggttttggtccttagtaaaaaaa 31489930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 11217127 - 11217066
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||| ||||||||||||| || |||||||  ||||||||| |||||||||||    
T  11217127 taaaatatgcttttggtccctgcaaatatagcgagtttgaattttggtccctggtaaaaaaa 11217066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 12385763 - 12385702
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||| |||| ||||||||||||| || |||||||| ||||||||| |||||||||||    
T  12385763 taaaatatgattttggtccctgcaaatatagcgagtttggattttggtccctggtaaaaaaa 12385702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 32544830 - 32544773
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    ||||||||| |||| ||||||||||||| || || |||||||||||||||||||||||    
T  32544830 taaaatatgattttggtccctgcaaatatagcgaatttgggttttggtccttggtaaa 32544773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 5611566 - 5611502
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || ||||||||||||| |||| | |||||||||    
T  5611566 ggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttcgtccctcgtaaaaaaa 5611502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 24197162 - 24197098
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| || || |||| |||||||| | |||||||||||    
T  24197162 ggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggttcctggtaaaaaaa 24197098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 35212068 - 35212132
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| |||||||||||||    |||||||||||||||||| |||||||||||    
T  35212068 ggctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaaaaaaa 35212132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 396
Target Start/End: Original strand, 41693749 - 41693869
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||||||  || | ||| ||| ||||||| ||||||   |||||||||| ||  |||||| ||  |||||||||  |||| |||||| ||||||    
T  41693749 aaaatagtccctgaccctacttttttgatgatttgtcacatttgtgcatatgtggcattagctgacggtacaaacttgtacatgtgacatccacgtggca 41693848  T
Q  376 attattttattttaactaatt 396  Q
    ||||||||||||||| |||||    
T  41693849 attattttattttaaataatt 41693869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 31853549 - 31853612
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||| |||| |||||||||||||  |||||||||| ||||||||| | |||||||||    
T  31853549 gctaaaatatgtttttggtccctgcaaatattgtgagtttggattttggtccctagtaaaaaaa 31853612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 41695014 - 41694951
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaa 259  Q
    |||||||||||| ||||  |||||||||||| || ||||||| |||||||||| ||||||||||    
T  41695014 ggctaaaatatgtttttcatccctgcaaatatagcgagtttgagttttggtccctggtaaaaaa 41694951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 43066004 - 43066065
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||| ||||  |||||||||||| || ||||||| |||||||| |||||||||||||    
T  43066004 taaaatatgttttttatccctgcaaatatagcgagtttgagttttggttcttggtaaaaaaa 43066065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 13418950 - 13419014
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| |||||||||||||  | || ||||||| ||||||| |||||||||||    
T  13418950 ggctaaaatatgtttttggtccctgcaaatattgcgaatttgggtattggtccctggtaaaaaaa 13419014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 32543483 - 32543539
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    |||||||||||||| |||||| |||||| ||  ||||||||||||| ||||||||||    
T  32543483 taaaatatgcttttggtccctacaaatatagcaagtttgggttttgatccttggtaa 32543539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 42254958 - 42255018
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    ||||||||||||||||| ||||||| |||||  | ||||||| |||||||||| |||||||    
T  42254958 ggctaaaatatgcttttggtccctgtaaatatggcgagtttgagttttggtccctggtaaa 42255018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 9454114 - 9454176
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaa 257  Q
    |||||||||||||||||   |||||||||| | ||  ||||||||||||||||||| ||||||    
T  9454114 tggctaaaatatgctttgcatccctgcaaacatagcaagtttgggttttggtccttcgtaaaa 9454176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 39619850 - 39619800
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggt 246  Q
    ||||||||||||||||| |||| ||||||||  | ||||||||||||||||    
T  39619850 ggctaaaatatgcttttggtccatgcaaatatggcgagtttgggttttggt 39619800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 36748197 - 36748249
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    ||||||||||||| |||| |||||||||||||  | ||||||||||||||||||    
T  36748197 tggctaaaatatgtttttggtccctgcaaata-tgagagtttgggttttggtcc 36748249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 554245 - 554297
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||  | || ||||||||||||| || ||||||||||||||||||    
T  554245 ggctaaaatataatattggtccctgcaaatatagcgagtttgggttttggtcc 554297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 9454757 - 9454725
Alignment:
Q  450 catttaattttaatttattaaaaacaacaaatc 482  Q
    |||||| ||||||||||||||||||||||||||    
T  9454757 catttatttttaatttattaaaaacaacaaatc 9454725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 25046299 - 25046235
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| |||| ||||||||  | |||||| | ||||||||| |||||||||||    
T  25046299 ggctaaaatatgattttggtccttgcaaatatggcgagtttagattttggtccatggtaaaaaaa 25046235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 31489892 - 31489772
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||||   ||||| ||||||||||||||| | |||| | || ||||||| || |||| ||| || |||| ||||  ||||||||    ||||||    
T  31489892 aaaatagtccccaaacccactttcttgctgatttgtctcatttttgcctatgtggcatatgctaactctgcaaacctgtacatgtggcattagggtggca 31489793  T
Q  376 attattttattttaactaatt 396  Q
    ||||||| |||||| ||||||    
T  31489792 attatttaattttacctaatt 31489772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 41693645 - 41693705
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    |||||||||||| ||||  ||||||||||||  | || ||||||||||||||| |||||||    
T  41693645 ggctaaaatatgtttttgatccctgcaaatatggcgaatttgggttttggtccctggtaaa 41693705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 276 - 396
Target Start/End: Original strand, 43641246 - 43641366
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||||||  | || ||||||| |||||||||||||| || |  |||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  43641246 aaaatagtccctgatctcactttcttgttgatttggcacattttctctcatgtggtaggtgctgactgtgtaaacttgtatatgtggcatccaagtggca 43641345  T
Q  376 attattttattttaactaatt 396  Q
    |||||||||||||||||||||    
T  43641346 attattttattttaactaatt 43641366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 295 - 396
Target Start/End: Complemental strand, 50563747 - 50563646
Alignment:
Q  295 ttttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaactaa 394  Q
    ||||||||||||||||||||||| || |  |||||||| ||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  50563747 ttttcttgctgatttggcacattttctctcatgtggtaggtgctgactgtgtaaacttgtacatgtggcatacaagtggcaattattttattttaactaa 50563648  T
Q  395 tt 396  Q
    ||    
T  50563647 tt 50563646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 52403079 - 52402959
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||| |||||||| ||||||| ||||||| ||||||   |||||||||| ||  ||||||| || |||||||||  |||| |||||| |||| |    
T  52403079 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtggta 52402980  T
Q  376 attattttattttaactaatt 396  Q
    ||||||||||||||| |||||    
T  52402979 attattttattttaaataatt 52402959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 22508720 - 22508799
Alignment:
Q  181 caacaattaaaaagtggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||  || ||||||||| |||| ||||||||||||| || ||||||| ||||||||||||||||||||||    
T  22508720 caacaattaaaaataggttaaaatatgattttggtccctgcaaatatagcgagtttgagttttggtccttggtaaaaaaa 22508799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 43641132 - 43641207
Alignment:
Q  185 aattaaaaagtggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||| |||| |||||||||||||||||||||||||||||||| || |||||||| || |||||| |||||||||||    
T  43641132 aatttaaaattggctaaaatatgcttttagtccctgcaaatatagcgagtttggattatggtccctggtaaaaaaa 43641207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 39820663 - 39820599
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || |||||||||||||||||| |||||||||||    
T  39820663 ggctaaaatatggttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaa 39820599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 52708677 - 52708615
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaa 257  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||||||||  ||||||||    
T  52708677 tggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtctctggtaaaa 52708615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 977906 - 977841
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||| |||||||||||| |||||||||||||    ||||||||||||||||||||||||||||||    
T  977906 tggctgaaatatgcttttggtccctgcaaatatgacgagtttgggttttggtccttggtaaaaaaa 977841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 45268629 - 45268565
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||| |||||||||||| ||  ||||||||||||||||| |||||||||||    
T  45268629 ggctaaaatatgtttttaatccctgcaaatatagcaagtttgggttttggtccctggtaaaaaaa 45268565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 53121302 - 53121366
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || ||||||||||||| |||| |||||||||||    
T  53121302 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaaaaa 53121366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 53122530 - 53122466
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||||||||||||||||| || |||| |  |||||||||| |||||||||||    
T  53122530 ggctaaaatatgcttttagtccctgcaaatatagagagtgtaagttttggtccctggtaaaaaaa 53122466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 52403183 - 52403124
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||||||||||||||| |||||||||||||  | |||||||||||||||||| ||||||    
T  52403183 ggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtccctggtaa 52403124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 20488368 - 20488430
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||| |||| |||||||||||||  |||| ||||||||||||||| |||||||||||    
T  20488368 ctaaaatatgtttttggtccctgcaaatatggtgaatttgggttttggtccctggtaaaaaaa 20488430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 39819314 - 39819376
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||| |||||||||||||||||| || |||||||  ||||||||| |||||||||||    
T  39819314 ctaaaatatggttttagtccctgcaaatatagcgagtttgaattttggtccctggtaaaaaaa 39819376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 42447846 - 42447785
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaa 257  Q
    |||||||||||||||||  | ||||||||||| || ||||||||||||||||| ||||||||    
T  42447846 ggctaaaatatgcttttgattcctgcaaatacggttagtttgggttttggtccctggtaaaa 42447785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 46027476 - 46027412
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||| ||||| ||||||||||||| || |||||||  ||||||||| |||||||||||    
T  46027476 ggctaaaatatacttttggtccctgcaaatatagcgagtttgaattttggtccctggtaaaaaaa 46027412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 47433868 - 47433804
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || || |||| |||||||||| |||||||||||    
T  47433868 ggctaaaatatggttttggtccctgcaaatatagcgaatttgagttttggtccctggtaaaaaaa 47433804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 52401017 - 52401077
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    |||||||||||| |||| |||||||||||||  | |||||||||||||||||| |||||||    
T  52401017 ggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctggtaaa 52401077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 20489416 - 20489353
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||| |||| |||||||||||||    |||||||||||||||||| |||||||||||    
T  20489416 gctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaaaaaaa 20489353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 42446526 - 42446577
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtc 247  Q
    ||||||||||||||||| |||||||||||||  | |||||||||||||||||    
T  42446526 ggctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtc 42446577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 20585474 - 20585400
Alignment:
Q  282 gtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtat 356  Q
    ||||||| ||||| ||||||||||||||| | |||| | || ||||||| |||||||||||||  ||||||||||    
T  20585474 gtccctgaacccactttcttgctgatttgactcatttttgcttatgtggcatgtgctgactgtacaaacttgtat 20585400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 4705680 - 4705740
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||||||||||||||||  ||||||||||||  | |||||| ||||||||||| ||||||    
T  4705680 tggctaaaatatgcttttgatccctgcaaatatggcgagtttaggttttggtccctggtaa 4705740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 40477433 - 40477381
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||| |||| ||||||||||||| |  ||||||||||||||||||    
T  40477433 ggctaaaatatgattttggtccctgcaaatataacgagtttgggttttggtcc 40477381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 46026076 - 46026128
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||| |||| ||||||||||||| || |||||||| |||||||||    
T  46026076 ggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtcc 46026128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 48033057 - 48033117
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||||||||||| |||| |||| ||||||||  |||||||||| ||||||||| ||||||    
T  48033057 tggctaaaatatgtttttggtccttgcaaatatggtgagtttggattttggtccctggtaa 48033117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 11914888 - 11914833
Alignment:
Q  200 aaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||| ||||||||||||||||||||| || || ||||||||||||| | ||||||    
T  11914888 aaaatgtgcttttagtccctgcaaatatagcgaatttgggttttggtgcctggtaa 11914833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 40476222 - 40476285
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||| |||| ||||||||||||| || |||||||| ||||||||  | |||||||||    
T  40476222 gctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtctctagtaaaaaaa 40476285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 46104343 - 46104402
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    |||||||||||| |||| ||||||||||||| || ||||||| ||||| |||| ||||||    
T  46104343 ggctaaaatatgattttggtccctgcaaatatagcgagtttgagtttttgtccctggtaa 46104402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 32637246 - 32637188
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    |||||||||||||||| ||||||| ||||  || |||||||||||||||| | ||||||    
T  32637246 gctaaaatatgcttttggtccctgtaaatgtagcgagtttgggttttggttcctggtaa 32637188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 45267306 - 45267364
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||||||||| ||||  |||||||||||| || ||||||| |||||||||| ||||||    
T  45267306 gctaaaatatgtttttgatccctgcaaatatagcgagtttgagttttggtccctggtaa 45267364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 50563024 - 50563114
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatc 366  Q
    ||||||||| || | |||| ||||||| |||||||||||||| | || ||||| | |||| || | |||||||||||||||  ||||||||    
T  50563024 aaaatagtctctagtcccactttcttgttgatttggcacatttttgcttatgtagcatgtcctaattgtgtaaacttgtatacgtggcatc 50563114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 9855177 - 9855242
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||| ||||  |||||| ||||| || |||||||| ||||||||| | |||||||||    
T  9855177 tggctaaaatatgattttgatccctgtaaatatagcgagtttggattttggtccctagtaaaaaaa 9855242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 42447743 - 42447670
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaa 349  Q
    |||||||||| |||||||| ||||||||||||||| | |||| | || ||||||  |  |||||||||||||||    
T  42447743 aaaatagtccttggacccactttcttgctgatttgtcccatttttgcctatgtgacagatgctgactgtgtaaa 42447670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 46104440 - 46104513
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaa 349  Q
    |||||||||||| | |||| |||  || ||||||||| |||| |||||||||||| |  |||||||||||||||    
T  46104440 aaaatagtccctaggcccactttactgatgatttggcgcattttcgcatatgtggcagatgctgactgtgtaaa 46104513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 13584377 - 13584337
Alignment:
Q  186 attaaaaagtggctaaaatatgcttttagtccctgcaaata 226  Q
    ||||||||  |||||||||||| ||||||||||||||||||    
T  13584377 attaaaaaaaggctaaaatatggttttagtccctgcaaata 13584337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 20585703 - 20585651
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||| ||||  |||||||||||| || |||||||| |||||||||    
T  20585703 ggctaaaatatgtttttgatccctgcaaatatagcgagtttggattttggtcc 20585651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 20802848 - 20802896
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttg 244  Q
    |||||||||||| || |||||||| |||||| || ||||||||||||||    
T  20802848 ggctaaaatatgtttctagtccctacaaatatagcgagtttgggttttg 20802896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 32635594 - 32635654
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    |||||||||||  |||| |||| || ||||| || |||||||||||||||||| |||||||    
T  32635594 ggctaaaatatattttttgtccttgtaaatatagcgagtttgggttttggtccctggtaaa 32635654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 34238915 - 34238851
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||||||||| |||||||   |  |||| |||||| ||||||||||||||||    
T  34238915 ggctaaaatatggttttagtccccgcaaatatgcttcgttttggttttagtccttggtaaaaaaa 34238851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 38505638 - 38505586
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||||||||  ||||||||||||  | ||||||| ||||||||||    
T  38505638 ggctaaaatatgcttttgctccctgcaaatatggcgagtttgagttttggtcc 38505586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 482
Target Start/End: Original strand, 43641404 - 43641436
Alignment:
Q  450 catttaattttaatttattaaaaacaacaaatc 482  Q
    |||||| ||||||||||||||||||||||||||    
T  43641404 catttatttttaatttattaaaaacaacaaatc 43641436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 44506582 - 44506646
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||||||||||||||||| |  |||||| |||||| |||  || ||||||||    
T  44506582 ggctaaaatatggttttagtccctgcaaatataacgagttttggtttttgtctctgataaaaaaa 44506646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 482
Target Start/End: Complemental strand, 50563594 - 50563562
Alignment:
Q  450 catttaattttaatttattaaaaacaacaaatc 482  Q
    |||||| ||||||||||||||||||||||||||    
T  50563594 catttatttttaatttattaaaaacaacaaatc 50563562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 51834942 - 51834878
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||||||||||||||||   |  |||| |||||| |||| |||||||||||    
T  51834942 ggctaaaatatggttttagtccctgcaaatatgcttcgttttggttttagtccctggtaaaaaaa 51834878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 54437526 - 54437474
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||| |||| ||||||||||||| || || |||| ||||||||||    
T  54437526 ggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttggtcc 54437474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 45517917 - 45517797
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||  ||| |||| ||||||||| ||||||| |||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||| |    
T  45517917 aaaatagtctatgggcccaatttcttgctaatttggcgcattttcgcttatgtggtaggtgctgactgtgtaaacttgtatatgtggcatccaggtggaa 45517818  T
Q  376 attattttattttaactaatt 396  Q
    |||||||||||||||||||||    
T  45517817 attattttattttaactaatt 45517797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 4184039 - 4183979
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  4184039 tggctaaaatatgcttttagtccctgcaaatatagtgcgtttgggttttggtccctggtaa 4183979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 10717121 - 10717185
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||    
T  10717121 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaa 10717185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 28996835 - 28996898
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  28996835 gctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaaaaa 28996898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 36588222 - 36588286
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| || ||||||| |||||||||| |||||||||||    
T  36588222 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgcgttttggtccctggtaaaaaaa 36588286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 36589446 - 36589382
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||||| |||||||||| || |||||| |||||||||||||||||||||||    
T  36589446 ggctaaaatatgattttagttcctgcaaatatagcgagtttaggttttggtccttggtaaaaaaa 36589382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 10718507 - 10718448
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||||||| ||||||    
T  10718507 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 10718448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 22534781 - 22534720
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaa 257  Q
    |||||||||||||||||  |||||||||||| || |||||||||||||||||| ||||||||    
T  22534781 ggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaa 22534720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 28998053 - 28997988
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||| |||| ||||||||||||| || |||||||||||||||||| | |||||||||    
T  28998053 tggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctagtaaaaaaa 28997988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 22272329 - 22272265
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||| ||||||| || || ||||||||||||||| |||||||||||    
T  22272329 ggctaaaatatgcttttggtccccgcaaatatagcgaatttgggttttggtccctggtaaaaaaa 22272265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 22533317 - 22533381
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||| | ||| || |||||||||||||||||| |||||||||||    
T  22533317 ggctaaaatatgcttttggtccctgtatatatagcgagtttgggttttggtccctggtaaaaaaa 22533381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 30124282 - 30124218
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| ||  |||||| |||||||||| |||||||||||    
T  30124282 ggctaaaatatgcttttggtccctgcaaataaagcaagtttgagttttggtccctggtaaaaaaa 30124218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 4182623 - 4182686
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||| ||||||| ||||| || || ||||||||||||||| |||||||||||    
T  4182623 gctaaaatatgcttttggtccctgtaaatatagcgaatttgggttttggtccctggtaaaaaaa 4182686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 41846650 - 41846711
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||||||| ||||| ||| ||||||| ||||||||  |||||||||||    
T  41846650 taaaatatgcttttagtccctgtaaatatagtaagtttggattttggtctctggtaaaaaaa 41846711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 45518019 - 45517962
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggt 253  Q
    ||||||||||||||||| |||||||||| || || |||||||||||||||||| ||||    
T  45518019 ggctaaaatatgcttttggtccctgcaagtatagcgagtttgggttttggtccctggt 45517962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 356
Target Start/End: Complemental strand, 22534678 - 22534598
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtat 356  Q
    |||| ||||| |||||||| ||||||||||||||||| |||| | || ||||||| | |||||||||||  ||||||||||    
T  22534678 aaaaaagtccttggacccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactgtacaaacttgtat 22534598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 38456789 - 38456725
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| ||  | ||| ||||||||||| |||||||||||    
T  38456789 ggctaaaatatgcttttggtccctgcaaatatagcaaatttaggttttggtccctggtaaaaaaa 38456725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 38658481 - 38658545
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||| | |||| |||||||| || || ||||||||||||||| |||||||||||    
T  38658481 ggctaaaatatgcttctggtccatgcaaatatagcgaatttgggttttggtccctggtaaaaaaa 38658545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 1420501 - 1420437
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || |||||||| | ||||||| || ||||||||    
T  1420501 ggctaaaatatgtttttggtccctgcaaatatagcgagtttggatattggtccctgataaaaaaa 1420437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 10718393 - 10718285
Alignment:
Q  285 cctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattatttta 384  Q
    |||| ||||| |||| |||||||||||||| ||   ||| | || | || || ||||||||||||| |||||  |||||||| ||||| |||||||||||    
T  10718393 cctgaacccactttcatgctgatttggcacctttaggcagacgtagcatatgttgactgtgtaaacatgtatacgtggcatctaagtgacaattatttta 10718294  T
Q  385 ttttaacta 393  Q
    |||| ||||    
T  10718293 tttttacta 10718285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 14197825 - 14197889
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| |||||||||||||  | |||||||| ||||||||| | |||||||||    
T  14197825 ggctaaaatatgtttttggtccctgcaaatatggcgagtttggattttggtccctagtaaaaaaa 14197889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 22270943 - 22271007
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||  |||||||||||| || || ||||| |||| |||| |||||||||||    
T  22270943 ggctaaaatatgcttttgatccctgcaaatatagcgaatttggattttagtccctggtaaaaaaa 22271007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 41847239 - 41847187
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    ||||||||||||||||||||| ||||||||| || || |||| ||||||||||    
T  41847239 ggctaaaatatgcttttagtctctgcaaatatagcgaatttgagttttggtcc 41847187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 39440480 - 39440417
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||| |||| ||||||||  | ||||||| |||||||||| || ||||||||    
T  39440480 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtccctgataaaaaaa 39440417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 3483635 - 3483685
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||| |||| ||||||||||||| || ||||||| ||||||||||    
T  3483635 ctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtcc 3483685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 45516399 - 45516461
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||| ||||||||| || ||||| || || ||||||||||||||  |||||||||||    
T  45516399 ctaaaatatgtttttagtccatgtaaatatagcgaatttgggttttggtctctggtaaaaaaa 45516461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 297178 - 297114
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| |||||||||||||| || || ||||| ||||| ||  |||||||||||    
T  297178 tggctaaaatatgcttt-agtccctgcaaatatagcgaatttggattttgatctctggtaaaaaaa 297114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 4183935 - 4183894
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacatt 317  Q
    |||| |||||||||||||| ||||||||| ||||||||||||    
T  4183935 aaaaaagtccctggacccactttcttgctaatttggcacatt 4183894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 14712837 - 14712784
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||||| |||| || ||| ||||| | |||||||||||||||||||    
T  14712837 tggctaaaatatgcctttaatctctgtaaatataatgagtttgggttttggtcc 14712784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 1376935 - 1376999
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||| ||||||| |||| ||||||||||||| ||  | ||||| ||||||||| |||||||||||    
T  1376935 ggcttaaatatgattttggtccctgcaaatatagccaatttggattttggtccctggtaaaaaaa 1376999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 1385614 - 1385550
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||| ||||||| |||| ||||||||||||| ||  | ||||| ||||||||| |||||||||||    
T  1385614 ggcttaaatatggttttggtccctgcaaatatagccaatttggattttggtccctggtaaaaaaa 1385550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 1526172 - 1526108
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||||||||||||||||  |   |||| |||||| |||| |||||||||||    
T  1526172 ggctaaaatatggttttagtccctgcaaatatggctcgttttggttttagtccctggtaaaaaaa 1526108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 10292816 - 10292880
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| |||||| |||||| || || |||| |||||| |||||| ||||||||    
T  10292816 ggctaaaatatgattttggtcccttcaaatatagcgaatttgcgttttgatccttgataaaaaaa 10292880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 39439924 - 39439988
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| |||||||||||||  |  |||||| ||||||| || |||||||||||    
T  39439924 ggctaaaatatgattttggtccctgcaaatatggctagtttgagttttggaccctggtaaaaaaa 39439988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 490 - 426
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  490 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaaaaa 426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 30966 - 30902
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  30966 ggctaaaatatggttttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaaaaa 30902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 29729 - 29793
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| |  |||||||| ||||||||| |||||||||||    
T  29729 ggctaaaatatgcttttggtccctgcaaataaaacgagtttggattttggtccctggtaaaaaaa 29793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 18810532 - 18810596
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  18810532 ggctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaaaaa 18810596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 20897557 - 20897492
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  20897557 tggctaaaatatggttttggtccctgcaaatatagtgaatttgggttttggtccctggtaaaaaaa 20897492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 396
Target Start/End: Original strand, 17516265 - 17516385
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||| |||||||| ||||||| ||||||| ||||||   |||||||||| ||   |||||| || |||||||||  |||| |||||| |||| |    
T  17516265 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattaactgactatgcaaacttgtacatgtgtcatccatgtggta 17516364  T
Q  376 attattttattttaactaatt 396  Q
    ||||||||||||||| |||||    
T  17516365 attattttattttaaataatt 17516385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 34998200 - 34998136
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||  |||||||||||| || |||||||||||||||||| |||||||||||    
T  34998200 ggctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaa 34998136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 14120747 - 14120640
Alignment:
Q  83 aacctcccttttctccccaacttatttaaagcattaccttatttgaatgttccaatatcctaaggcaagggatgaaattaacatgaaggtttagggttca 182  Q
    ||||| ||||||||||||||||| ||   | ||| ||||||||||||||||||  || |||| |||||||||  || | ||||||||||||||||||||     
T  14120747 aaccttccttttctccccaacttgttcccaacataaccttatttgaatgttcccctagcctatggcaagggac-aattaaacatgaaggtttagggttcg 14120649  T
Q  183 acaattaaa 191  Q
    |||||||||    
T  14120648 acaattaaa 14120640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 21165245 - 21165305
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    |||||||||||||||||| ||||||||||||| || ||||||| |||||||||| ||||||    
T  21165245 tggctaaaatatgcttttggtccctgcaaatatagcgagtttgtgttttggtccctggtaa 21165305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 21953206 - 21953270
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| || || ||||| ||||||||| |||||||||||    
T  21953206 ggctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccctggtaaaaaaa 21953270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 17000337 - 17000284
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||| ||||| ||||||||||||  |||||||||||||||||||||    
T  17000337 tggctaaaatatacttttggtccctgcaaatgtagtgagtttgggttttggtcc 17000284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 20391217 - 20391266
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  20391217 taaaatatgcttttggtccctgcaaatatagtgaatttgggttttggtcc 20391266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 16995451 - 16995515
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| |  || ||||||||||||||| |||||||||||    
T  16995451 ggctaaaatatgtttttggtccctgcaaatataaagaatttgggttttggtccctggtaaaaaaa 16995515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 17517368 - 17517304
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| |||||||||||||  | ||||||| |||||||||| |||||||||||    
T  17517368 ggctaaaatatgtttttggtccctgcaaatatggcgagtttgagttttggtccctggtaaaaaaa 17517304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 17516164 - 17516214
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||| |||| |||||||||||||  ||||||||||||||||||||    
T  17516164 ctaaaatatgtttttggtccctgcaaatatggtgagtttgggttttggtcc 17516214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 1972399 - 1972464
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||| |||| ||||||||||||| || || |||||||||| |||  |||||||||||    
T  1972399 tggctaaaatatgtttttggtccctgcaaataaagcgaatttgggttttagtctctggtaaaaaaa 1972464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 17000233 - 17000192
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacatt 317  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  17000233 aaaaaagtccctggacccactttcttgctgatttggcacatt 17000192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 20393328 - 20393263
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||||  |||||||||||| || || |||||||||  |||| |||||||||||    
T  20393328 tggctaaaatatgcttttgatccctgcaaatatagcgaatttgggtttcagtccctggtaaaaaaa 20393263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 29291359 - 29291411
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    ||||||||||||||||| |||| ||||||||  | ||||||||||||||||||    
T  29291359 ggctaaaatatgcttttggtccttgcaaatatggcgagtttgggttttggtcc 29291411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 34995114 - 34995178
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||  |||||||||||| || || |||| |||||||| | |||||||||||    
T  34995114 ggctaaaatatgcttttgatccctgcaaatatagcgaatttgagttttggttcctggtaaaaaaa 34995178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 30253596 - 30253534
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||| |||| |||||||||||||||| |||| || |||||||||  | |||||||||    
T  30253596 ctaaaatatgtttttggtccctgcaaatacagcgagtatgagttttggtctcttgtaaaaaaa 30253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 16995555 - 16995596
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacatt 317  Q
    |||| ||||| ||| |||||||||||||||||||||||||||    
T  16995555 aaaaaagtccttggccccattttcttgctgatttggcacatt 16995596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 34989962 - 34989991
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaata 226  Q
    ||||||||||||||||||||||||||||||    
T  34989962 gctaaaatatgcttttagtccctgcaaata 34989991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 3276367 - 3276431
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || || ||||| |||| |||| | |||||||||    
T  3276367 ggctaaaatatgtttttggtccctgcaaatatagcgaatttggattttagtccctagtaaaaaaa 3276431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 10805401 - 10805373
Alignment:
Q  165 atgaaggtttagggttcaacaattaaaaa 193  Q
    |||||||||||||||||||||||||||||    
T  10805401 atgaaggtttagggttcaacaattaaaaa 10805373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 14655379 - 14655443
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||||||||||||||||   |  |||| |||||| |||| |||||||||||    
T  14655379 ggctaaaatatggttttagtccctgcaaatatgcttcgttttggttttagtccctggtaaaaaaa 14655443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 19296413 - 19296377
Alignment:
Q  190 aaaagtggctaaaatatgcttttagtccctgcaaata 226  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  19296413 aaaattggctaaaatatggttttagtccctgcaaata 19296377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 9774947 - 9774883
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||    
T  9774947 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaa 9774883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 34934806 - 34934745
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaa 257  Q
    ||||||||||||||||| ||||||||||||| || || ||||||||||||||||||||||||    
T  34934806 ggctaaaatatgctttttgtccctgcaaatatagcgaatttgggttttggtccttggtaaaa 34934745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 37396900 - 37396835
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||| ||||||||||||| || || |||| ||||||||||||||||||||||    
T  37396900 tggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccttggtaaaaaaa 37396835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 396
Target Start/End: Original strand, 24610022 - 24610142
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||||| | |||| ||| ||| ||||||| ||||||   |||||||||| ||| ||||| |||  |||||||||  ||||||||||| ||||||    
T  24610022 aaaatagtccctcgccccacttttttggtgatttgtcacatttgtgcatatgtggcatgagctgattgtacaaacttgtacatgtggcatccatgtggca 24610121  T
Q  376 attattttattttaactaatt 396  Q
    ||||| ||||||||| |||||    
T  24610122 attatattattttaaataatt 24610142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 27264275 - 27264211
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || |||||||||||||||||| |||||||||||    
T  27264275 ggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaa 27264211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 35911947 - 35911883
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| || || ||||| |||||||||||||||||||||    
T  35911947 ggctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccttggtaaaaaaa 35911883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 47038866 - 47038930
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||||||||||||||||| ||  ||||||||||||||||| |||||||||||    
T  47038866 ggctaaaatatgtttttagtccctgcaaatatagctagtttgggttttggtccctggtaaaaaaa 47038930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 20722471 - 20722536
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||| ||||||| ||||||||||||| || || ||||||||||||||| |||||||||||    
T  20722471 tggctaaaatgtgcttttggtccctgcaaatatagcgaatttgggttttggtccctggtaaaaaaa 20722536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 30722115 - 30722180
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||||| ||||||| |||| ||  ||||||| |||||||||||||||||||||    
T  30722115 tggctaaaatatgcttttaatccctgcgaatatagcaagtttggattttggtccttggtaaaaaaa 30722180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 46075110 - 46075045
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||| ||||  |||||||||||| || |||||||||||||||||| |||||||||||    
T  46075110 tggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaa 46075045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 17977618 - 17977554
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||| ||||||| |||| ||||||||||||| || || |||||||||||||||||||||||||||    
T  17977618 ggcttaaatatggttttggtccctgcaaatatagcgaatttgggttttggtccttggtaaaaaaa 17977554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 396
Target Start/End: Original strand, 24422618 - 24422738
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||| | |||||| ||||||||| ||||| | ||||   || ||||||| || |||||||| || |||| ||||  ||||||||||| ||||||    
T  24422618 aaaatagtccttagacccactttcttgctaatttgtctcatttctgcctatgtggcatatgctgactatgcaaacatgtacatgtggcatccaggtggca 24422717  T
Q  376 attattttattttaactaatt 396  Q
    || |||| |||||||||||||    
T  24422718 ataatttaattttaactaatt 24422738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 27262908 - 27262972
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || ||||||| |||||||||| |||||||||||    
T  27262908 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgtgttttggtccctggtaaaaaaa 27262972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 39163083 - 39163019
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| |||||||||||||  | ||| |||||||||||||| |||||||||||    
T  39163083 ggctaaaatatgcttttggtccctgcaaatatggcgaggttgggttttggtccctggtaaaaaaa 39163019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 50164403 - 50164461
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggta 254  Q
    ||||||||||||||||| |||||||||||||  | ||||||| ||||||||||||||||    
T  50164403 ggctaaaatatgcttttggtccctgcaaatatggcgagtttgagttttggtccttggta 50164461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 35911785 - 35911724
Alignment:
Q  335 tgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaactaatt 396  Q
    ||||||| ||| |||| ||||  ||||||||||| |||||||||||||||||||||||||||    
T  35911785 tgctgacggtgcaaacatgtacatgtggcatccaggtggcaattattttattttaactaatt 35911724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 2604186 - 2604122
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||||||||||||||||  | |||||||||||||| || |||| |||||||    
T  2604186 ggctaaaatatgtttttagtccctgcaaatatggggagtttgggttttgatctttggcaaaaaaa 2604122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 35721101 - 35721165
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| |  || ||||||||||||||| |||||||||||    
T  35721101 ggctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtccctggtaaaaaaa 35721165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 23470035 - 23469968
Alignment:
Q  189 aaaaagtggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    ||||| ||||||||||||| |||| ||||||||||||| || |||||| ||||||| ||| |||||||    
T  23470035 aaaaaatggctaaaatatgtttttggtccctgcaaatatagcgagtttcggttttgatccctggtaaa 23469968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 34934621 - 34934583
Alignment:
Q  358 tgtggcatccaagtggcaattattttattttaactaatt 396  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  34934621 tgtggcatccaggtggcaattattttattttaactaatt 34934583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 11711313 - 11711249
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||| |||| ||||||||||||| || || |||||| |||||||| |||||||||||    
T  11711313 tggctaaaatatgtttttggtccctgcaaatatagcgaatttggg-tttggtccctggtaaaaaaa 11711249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 17976760 - 17976825
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||| ||||||| |||| || |||||||||| || || ||||||||||||||| |||||||||||    
T  17976760 tggcttaaatatggttttggttcctgcaaatatagcgaatttgggttttggtccctggtaaaaaaa 17976825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 24422514 - 24422579
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||| ||||||| ||||| |||||  |||| ||||| ||| |||||||||||    
T  24422514 tggctaaaatatgcttttggtccctgtaaatatagtgaagttggattttgatccctggtaaaaaaa 24422579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 393
Target Start/End: Original strand, 27263011 - 27263128
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||| |||||||| ||||| |||| | ||||||| |||| ||   ||| | |||| || || ||||||||||||| |||||  |||||||| ||||| ||    
T  27263011 aaaacagtccctgaacccactttcatactgattttgcacctttaagcagacgtggcatatgttgactgtgtaaacatgtatacgtggcatctaagtgaca 27263110  T
Q  376 attattttattttaacta 393  Q
    ||||||||||||| ||||    
T  27263111 attattttatttttacta 27263128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 30722219 - 30722292
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaa 349  Q
    ||||||||||||||||||| ||||||||||||||| | |||| | || || |||| |  |||||||||||||||    
T  30722219 aaaatagtccctggacccactttcttgctgatttgtctcatttttgcctacgtggcaaatgctgactgtgtaaa 30722292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 24427325 - 24427205
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    ||||||||||||| ||||| ||||||| ||||||| | |||| | || ||| ||  || |||||||| || |||| ||||  |||||||||||  |||||    
T  24427325 aaaatagtccctgaacccactttcttggtgatttgtctcatttttgcctatttgaaatatgctgactatgcaaacctgtacatgtggcatccagttggca 24427226  T
Q  376 attattttattttaactaatt 396  Q
    ||||||  |||||| ||||||    
T  24427225 attattcaattttacctaatt 24427205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 24609919 - 24609971
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||| |||| |||||||||||||  | ||||||||||||||||||    
T  24609919 ggctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtcc 24609971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 396
Target Start/End: Original strand, 35721201 - 35721321
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||||||||||||| |||| ||| | | ||||||| ||||||   |||||  ||| |  ||||||| ||| |||| | ||  ||||||||| | ||||||    
T  35721201 aaaatagtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatttacatgtggcatctaggtggca 35721300  T
Q  376 attattttattttaactaatt 396  Q
    |||||||||||||||||||||    
T  35721301 attattttattttaactaatt 35721321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 37395633 - 37395693
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    |||||||||||| |||| ||||||||||||| || |  ||||||||||||||| |||||||    
T  37395633 ggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggtaaa 37395693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 48589020 - 48588968
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||| |||| ||||||| |||||  ||||||||||||||||||||    
T  48589020 ggctaaaatatgtttttggtccctgtaaatatggtgagtttgggttttggtcc 48588968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 27816774 - 27816715
Alignment:
Q  201 aaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||| |||| ||||||||||||| ||  | ||||||||||||||| |||||||||||    
T  27816774 aaatatggttttggtccctgcaaatatagccaatttgggttttggtccctggtaaaaaaa 27816715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 48856213 - 48856276
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||| ||||| ||| ||||||||  |||||||| ||||||| || ||||||||||||    
T  48856213 gctaaaatatgtttttaatccttgcaaatatggtgagtttaggttttgatctttggtaaaaaaa 48856276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 20723747 - 20723685
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaa 258  Q
    |||||||||||| |||| ||||||||||||| || || |||| ||||| |||| |||||||||    
T  20723747 ggctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttagtccctggtaaaaa 20723685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 24427428 - 24427366
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaa 258  Q
    |||||||||||| |||| |||||| |||||| || ||||||| ||||| |||| |||||||||    
T  24427428 ggctaaaatatgtttttggtccctacaaatatagcgagtttgagttttagtccctggtaaaaa 24427366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 31475162 - 31475236
Alignment:
Q  77 aagcaaaacctcccttttctccccaacttatttaaagcattaccttatttgaatgttccaatatcctaaggcaag 151  Q
    |||| |||| |||||||||||||||||||   |||| ||| ||| || |||||||||||  ||||||||||||||    
T  31475162 aagctaaacttcccttttctccccaacttgcgtaaaccataaccctaattgaatgttcccctatcctaaggcaag 31475236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 39162822 - 39162883
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaat-acagtgagtttgggttttggtccttggtaa 255  Q
    |||||||| ||||||||| |||||||||||| |  | |||||||| ||||||||||||||||    
T  39162822 tggctaaattatgcttttggtccctgcaaataatggcgagtttggattttggtccttggtaa 39162883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 46075009 - 46074972
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggca 313  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  46075009 aaaatagtccctggacccactttcttgcttatttggca 46074972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 9774040 - 9774096
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||||||| |||| ||||||||||||| |  ||||||| |||||||||| ||||||    
T  9774040 taaaatatgtttttggtccctgcaaatataacgagtttgagttttggtccctggtaa 9774096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 11710553 - 11710617
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||  |||||| ||||| |  ||| |||||||||||||| |||||||||||    
T  11710553 ggctaaaatatgtttttgatccctgtaaatataacgaggttgggttttggtccctggtaaaaaaa 11710617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 26863860 - 26863920
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    ||||||||| || |||| ||||||||||||| || || |||| |||||||||| |||||||    
T  26863860 ggctaaaatgtgtttttggtccctgcaaatatagcgaatttgagttttggtccctggtaaa 26863920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 27815441 - 27815505
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||| ||||||| || | ||||||||||||| ||  | ||||||||||||||| |||||||||||    
T  27815441 ggcttaaatatggttctggtccctgcaaatatagccaatttgggttttggtccctggtaaaaaaa 27815505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 35722344 - 35722280
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||| ||||| || || ||||| ||||||||  |||||||||||    
T  35722344 ggctaaaatatgtttttggtccctgtaaatatagcgaatttggattttggtctctggtaaaaaaa 35722280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 46073885 - 46073945
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    |||||||||||||||||  |||||||||||| ||  | |||||||||| |||| |||||||    
T  46073885 ggctaaaatatgcttttgatccctgcaaatatagcaaatttgggttttagtccctggtaaa 46073945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 10314 - 10379
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||| ||||||||||||| || || |||| ||||||||||||||||||||||    
T  10314 tggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccttggtaaaaaaa 10379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 11581 - 11521
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    |||||||||||| |||| ||||||||||||| || |  ||||||||||||||| |||||||    
T  11581 ggctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggtaaa 11521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 121044 - 120980
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||| ||||||||||||| |  |||||||||||||||||| |||||||||||    
T  121044 ggctaaaatatgcttttggtccctgcaaatataacgagtttgggttttggtccctggtaaaaaaa 120980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 119592 - 119652
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    |||||||||||||||||| ||||||||||||| || || |||| |||||||||| ||||||    
T  119592 tggctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccctggtaa 119652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 3938119 - 3938055
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||||||||||||||||||| ||  ||||| ||||||||||| |||||||||||    
T  3938119 ggctaaaatatgcttttagtccctgcaaatatagcaagtttaggttttggtccctggtaaaaaaa 3938055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 3936578 - 3936640
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaa 258  Q
    |||||||||||| |||| ||||||||||||| || |||||||||||||||||| |||||||||    
T  3936578 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaaa 3936640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 4777640 - 4777704
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||| ||||||||||||||||| |||||||| ||| ||||||| ||||||||| |||||||||||    
T  4777640 ggcttaaatatgcttttagtccttgcaaatatagtaagtttggattttggtccctggtaaaaaaa 4777704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 27571188 - 27571124
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || |||||||||||||| ||| |||||||||||    
T  27571188 ggctaaaatatgattttggtccctgcaaatatagcgagtttgggttttgatccctggtaaaaaaa 27571124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 4565393 - 4565452
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    |||||||||||| ||||||||||| |||||| || |||||||||||||||||| ||||||    
T  4565393 ggctaaaatatgtttttagtccctacaaatatagcgagtttgggttttggtccctggtaa 4565452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 3205159 - 3205097
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||  ||||||||||||   ||||||||||||||||||| |||||||||||    
T  3205159 ctaaaatatgcttttgatccctgcaaatatgatgagtttgggttttggtccctggtaaaaaaa 3205097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 385
Target Start/End: Complemental strand, 35605527 - 35605418
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    ||||||||| ||| ||||| ||||||||||||||||  |||| |||| ||| ||| | ||||||| ||| ||||||||||   |||||||||| || |||    
T  35605527 aaaatagtctctgaacccactttcttgctgatttggtgcattttcgcttatatggcaggtgctgaatgtctaaacttgtacacgtggcatccaggttgca 35605428  T
Q  376 attattttat 385  Q
    |||| |||||    
T  35605427 attaatttat 35605418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 3954052 - 3954116
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| |||| |||||||| |  || ||||||||||||||| |||||||||||    
T  3954052 ggctaaaatatgtttttggtccttgcaaatatatcgaatttgggttttggtccctggtaaaaaaa 3954116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 34911887 - 34911823
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || |||||||| ||||| ||| | |||||||||    
T  34911887 ggctaaaatatgattttggtccctgcaaatatagcgagtttggattttgatccctagtaaaaaaa 34911823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 39379610 - 39379546
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||||||||||||||||   |  |||| |||||| ||||||||||||||||    
T  39379610 ggctaaaatatggttttagtccctgcaaatatgcttcgttttggttttagtccttggtaaaaaaa 39379546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 2217866 - 2217824
Alignment:
Q  184 caattaaaaagtggctaaaatatgcttttagtccctgcaaata 226  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||    
T  2217866 caatttaaaagaggctaaaatatggttttagtccctgcaaata 2217824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 40029509 - 40029467
Alignment:
Q  184 caattaaaaagtggctaaaatatgcttttagtccctgcaaata 226  Q
    |||||||| | ||||||||||||| ||||||||||||||||||    
T  40029509 caattaaataatggctaaaatatggttttagtccctgcaaata 40029467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 6894070 - 6894005
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||| |||| |||| ||||||||    |||||| ||||||||||| |||||||||||    
T  6894070 tggctaaaatatgtttttggtccttgcaaatatgacgagtttaggttttggtccctggtaaaaaaa 6894005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 25254188 - 25254131
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||||||||||||| ||||||||||||| |  ||||||| |||||| ||| ||||||    
T  25254188 ctaaaatatgcttttggtccctgcaaatatatagagtttgagttttgatccctggtaa 25254131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 25317978 - 25317921
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||||||||||||| ||||||||||||| |  ||||||| |||||| ||| ||||||    
T  25317978 ctaaaatatgcttttggtccctgcaaatatatagagtttgagttttgatccctggtaa 25317921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 15599765 - 15599817
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    ||||||||||||||||| |||||| ||||||  | || |||||||||||||||    
T  15599765 ggctaaaatatgcttttggtccctacaaatatggcgaatttgggttttggtcc 15599817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 38496782 - 38496718
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||||||||||||||||   |  |||| |||||| |||| |||||||||||    
T  38496782 ggctaaaatatggttttagtccctgcaaatatgtttcgttttggttttagtccctggtaaaaaaa 38496718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 45618285 - 45618349
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||| |||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||    
T  45618285 ggctaatatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaa 45618349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 41933807 - 41933882
Alignment:
Q  185 aattaaaaagtggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||  |||||||||||| |||| ||| ||||||||| || |||||||||||||||||||| |||||||||    
T  41933807 aattaaaaataggctaaaatatgattttggtctctgcaaatatagcgagtttgggttttggtccttagtaaaaaaa 41933882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 22204054 - 22204119
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||| |||| ||||||||||||| || ||||||||||||| |||| |||||||||||    
T  22204054 tggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaaaaa 22204119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 22205282 - 22205217
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||||||||||||||||| || |||| |  |||||||||| |||||||||||    
T  22205282 tggctaaaatatgcttttagtccctgcaaatatagagagtgtaagttttggtccctggtaaaaaaa 22205217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 42359406 - 42359341
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||| |||| ||||||||||||| || |||||||| ||||||||| |||||||||||    
T  42359406 tggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctggtaaaaaaa 42359341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 17281571 - 17281635
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||| ||||||||||||||||||||| || || ||||| ||||||||| |||||||||||    
T  17281571 ggctaaaatgtgcttttagtccctgcaaatatagcgaatttggattttggtccctggtaaaaaaa 17281635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 17370073 - 17370137
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||| ||||||||||||||||||||| || || ||||| ||||||||| |||||||||||    
T  17370073 ggctaaaatgtgcttttagtccctgcaaatatagcgaatttggattttggtccctggtaaaaaaa 17370137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 54121759 - 54121695
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||  ||||||||||||| | |||||||||||||||||| |||||||||||    
T  54121759 ggctaaaatatgattttgctccctgcaaatacggcgagtttgggttttggtccctggtaaaaaaa 54121695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 29060941 - 29060879
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaa 258  Q
    |||||||||||| ||||| |||||||||||| || |||||||  |||||||||||||||||||    
T  29060941 ggctaaaatatgtttttaatccctgcaaatatagcgagtttgaattttggtccttggtaaaaa 29060879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 45619790 - 45619728
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaa 258  Q
    |||||||||||| |||||||||||||||||| || |||||| ||||||| ||| |||||||||    
T  45619790 ggctaaaatatgtttttagtccctgcaaatatagcgagtttaggttttgttccctggtaaaaa 45619728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 19675680 - 19675615
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||| ||||||||||||| |  |||||||| ||||||||| || ||||||||    
T  19675680 tggctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtccctgataaaaaaa 19675615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 3879086 - 3879146
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    |||||||||||||||||  |||||||||||| || |||||||| ||||||||| |||||||    
T  3879086 ggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggtaaa 3879146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 3880555 - 3880491
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| || |||||||||| || |||||||||||||||||| | |||||||||    
T  3880555 ggctaaaatatgtttttggttcctgcaaatatagcgagtttgggttttggtccctagtaaaaaaa 3880491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 38166495 - 38166559
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| ||||| |||||||||||| || |||||||| ||||||| ||||||| |||||    
T  38166495 ggctaaaatatgtttttaatccctgcaaatatagcgagtttggattttggtgcttggtataaaaa 38166559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 19674414 - 19674473
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||||||||||||||| |||| |||||||| || ||||||| |||||||||| ||||||    
T  19674414 ggctaaaatatgcttttggtccttgcaaatatagcgagtttgagttttggtccctggtaa 19674473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 33137287 - 33137225
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaa 258  Q
    |||||||||||| ||||  |||||||||||| || ||||||||||||| |||| |||||||||    
T  33137287 ggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttagtccctggtaaaaa 33137225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 32699374 - 32699321
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    ||||||||||||| |||| ||||||| ||||| || ||||||||||||||||||    
T  32699374 tggctaaaatatgtttttggtccctgtaaatatagcgagtttgggttttggtcc 32699321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 40198577 - 40198633
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    |||||||||||||||||   ||||||||||| || |||||||||||||||||| ||||||    
T  40198577 ggctaaaatatgctttt---ccctgcaaatatagcgagtttgggttttggtccctggtaa 40198633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 3880453 - 3880389
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctga 340  Q
    |||| ||||||||||||||||||||| |||||||||| |||| | || ||||||| | |||||||    
T  3880453 aaaaaagtccctggacccattttcttactgatttggctcattgttgcttatgtggcaggtgctga 3880389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 35054665 - 35054713
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtc 247  Q
    ||||||||| |||||||||||||||||| || || ||||||||||||||    
T  35054665 taaaatatgattttagtccctgcaaatatagcgaatttgggttttggtc 35054713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 42358032 - 42358096
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| ||  |||||| |||||| ||| |||||||||||    
T  42358032 ggctaaaatatgtttttggtccctgcaaatataggaagtttgagttttgatccctggtaaaaaaa 42358096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 44705298 - 44705349
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggt 246  Q
    ||||||||||||| |||| ||| ||||||||| ||||| |||||||||||||    
T  44705298 tggctaaaatatgtttttggtctctgcaaatatagtgaatttgggttttggt 44705349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 16574424 - 16574363
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||| |||||||||||||||||| || || |||  |||||||||| | |||||||||    
T  16574424 taaaatatgtttttagtccctgcaaatatagcgaatttaagttttggtcccttgtaaaaaaa 16574363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 16916069 - 16916118
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtc 247  Q
    ||||||||| ||||| |||||||||||||  ||||||||| |||||||||    
T  16916069 ctaaaatatacttttggtccctgcaaatatggtgagtttgagttttggtc 16916118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 17371901 - 17371845
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||||||||||||  |||||||||||| |  || ||||||||||||||| ||||||    
T  17371901 taaaatatgcttttgatccctgcaaatataacgaatttgggttttggtccctggtaa 17371845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 34659706 - 34659758
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    ||||||||||||||||| |||||||||||||  | |||||  |||||||||||    
T  34659706 ggctaaaatatgcttttggtccctgcaaatatggcgagttaaggttttggtcc 34659758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 41935126 - 41935078
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtc 247  Q
    ||||||||| |||| ||||||||||||| |  |||||||||||||||||    
T  41935126 taaaatatgtttttggtccctgcaaatataacgagtttgggttttggtc 41935078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 1778850 - 1778787
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaa 258  Q
    |||||||||||||||||| || |||||||||| || || |||||||||||||||||||||||||    
T  1778850 tggctaaaatatgcttttggttcctgcaaatatagcgactttgggttttggtccttggtaaaaa 1778787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 25977870 - 25977929
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  25977870 ggctaaaatatgtttttggtccctgcaaatatagtgagtttgggttttggtccctggtaa 25977929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 2411261 - 2411326
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||||||||||||||||||| || |||| |  |||||||||| |||||||||||    
T  2411261 tggctaaaatatgcttttagtccctgcaaatatagagagtgtaagttttggtccctggtaaaaaaa 2411326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 1777469 - 1777533
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || ||||||| |||||||||| |||||||||||    
T  1777469 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctggtaaaaaaa 1777533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 2412487 - 2412423
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || ||||||||||||| |||| |||||||||||    
T  2412487 ggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaaaaa 2412423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 11087049 - 11087109
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    |||||||||||| ||||| |||||||||||| || |||||||| |||||||||||||||||    
T  11087049 ggctaaaatatgattttaatccctgcaaatatagcgagtttggcttttggtccttggtaaa 11087109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 25979310 - 25979246
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| ||||||||||||| || || ||||||||||||||| |||||||||||    
T  25979310 ggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctggtaaaaaaa 25979246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 23861752 - 23861816
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||| |||| |||||||||||||  | |||||||| ||||||||| |||||||||||    
T  23861752 ggctaaaatatgtttttggtccctgcaaatatggagagtttggattttggtccctggtaaaaaaa 23861816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 30843644 - 30843704
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    |||||||||||||||||| || ||||||||| |  |||||||||||||||||| |||||||    
T  30843644 ggctaaaatatgcttttaatcactgcaaatataacgagtttgggttttggtccctggtaaa 30843704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 393
Target Start/End: Original strand, 1777572 - 1777689
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 375  Q
    |||| ||| |||||||||| |||| |||||||||| ||| ||   ||| | |||| || || |||| |||||||| |||||  |||||||| ||||| ||    
T  1777572 aaaacagttcctggacccactttcatgctgatttgccacctttaagcagacgtggcatatgttgacagtgtaaacatgtatacgtggcatctaagtgaca 1777671  T
Q  376 attattttattttaacta 393  Q
    ||||||||||||| ||||    
T  1777672 attattttatttttacta 1777689  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 25977973 - 25978014
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcacatt 317  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  25977973 aaaaaagtccctggacccactttcttgctgatttggcacatt 25978014  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 36837834 - 36837773
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||  |||| ||| ||||||||| || |||||||||||||||||| |||||||||||    
T  36837834 taaaatatatttttggtctctgcaaatatagcgagtttgggttttggtccctggtaaaaaaa 36837773  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 21573938 - 21574000
Alignment:
Q  198 ctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||||||||| |||||||||||||     ||||||  |||||||||||||||||||||    
T  21573938 ctaaaatatgcttttggtccctgcaaatatgacaagtttgatttttggtccttggtaaaaaaa 21574000  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 43788848 - 43788922
Alignment:
Q  186 attaaaaagtggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||  |||||||||||| ||||||||||||||||||      |||| |||||| ||||||||||||||||    
T  43788848 attaaaaataggctaaaatatggttttagtccctgcaaatatgcctcgttttggttttagtccttggtaaaaaaa 43788922  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 24748212 - 24748275
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||| ||||||||||||| ||||||| || ||  ||| |||||||||| |||||||||||    
T  24748212 ggctaaaatgtgcttttagtcccagcaaatatagcga-attgagttttggtccctggtaaaaaaa 24748275  T

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Target: scaffold0562 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 9922 - 9982
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaa 256  Q
    |||||||||||||||||  |||||||||||| || |||||||| ||||||||| |||||||    
T  9922 ggctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggtaaa 9982  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 344937 - 345001
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||| ||||||| |||| |||||||||||||  | |||||||||||||||||| |||||||||||    
T  344937 ggctcaaatatgattttggtccctgcaaatatggcgagtttgggttttggtccctggtaaaaaaa 345001  T

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Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 376428 - 376381
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggtttt 243  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||    
T  376428 ggctaaaatatgcttttggtccctgcaaatatagcgagtttgggtttt 376381  T

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Target: scaffold0002; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 374334 - 374387
Alignment:
Q  195 tggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    ||||||||||||| ||||  |||||||||||| || ||||||||||||||||||    
T  374334 tggctaaaatatgattttgatccctgcaaatatagcgagtttgggttttggtcc 374387  T

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Target: scaffold0002; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 345956 - 345904
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    |||||||||||| |||| ||||||||||||| || || |||||||||||||||    
T  345956 ggctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtcc 345904  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 202579 - 202631
Alignment:
Q  196 ggctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtcc 248  Q
    ||||||||||||||||| ||||||||||||| |  |||||||| |||||||||    
T  202579 ggctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtcc 202631  T

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Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 202682 - 202720
Alignment:
Q  276 aaaatagtccctggacccattttcttgctgatttggcac 314  Q
    |||||||||||||||| || |||||||||||||||||||    
T  202682 aaaatagtccctggactcactttcttgctgatttggcac 202720  T

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Target: scaffold0599 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 6639 - 6584
Alignment:
Q  200 aaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaa 255  Q
    ||||| ||||||||||||||||||||| || || ||||||||||||| | ||||||    
T  6639 aaaatgtgcttttagtccctgcaaatatagcgaatttgggttttggtgcctggtaa 6584  T

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Target: scaffold0095 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 42813 - 42750
Alignment:
Q  197 gctaaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    |||||||||||||||| |||| ||||||||  | ||||||| |||||||||| || ||||||||    
T  42813 gctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtccctgataaaaaaa 42750  T

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Target: scaffold0765 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 1863 - 1924
Alignment:
Q  199 taaaatatgcttttagtccctgcaaatacagtgagtttgggttttggtccttggtaaaaaaa 260  Q
    ||||||||| |||| ||||||||||||| || ||||||| |||||| ||| | |||||||||    
T  1863 taaaatatgattttggtccctgcaaatatagcgagtttgagttttgatccctagtaaaaaaa 1924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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