View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11008_low_8 (Length: 543)

Name: NF11008_low_8
Description: NF11008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11008_low_8
NF11008_low_8
[»] chr6 (6 HSPs)
chr6 (11-438)||(3709397-3709824)
chr6 (433-527)||(3707206-3707300)
chr6 (243-358)||(6257236-6257351)
chr6 (401-444)||(8210089-8210132)
chr6 (400-445)||(31946389-31946434)
chr6 (401-449)||(30625578-30625626)
[»] chr1 (8 HSPs)
chr1 (400-448)||(26759466-26759514)
chr1 (402-448)||(26925024-26925070)
chr1 (400-448)||(18628874-18628922)
chr1 (400-448)||(33323992-33324040)
chr1 (400-448)||(11871520-11871568)
chr1 (400-446)||(2688245-2688290)
chr1 (242-292)||(18628960-18629010)
chr1 (400-448)||(23777134-23777181)
[»] chr4 (7 HSPs)
chr4 (401-448)||(32338357-32338404)
chr4 (400-447)||(44136906-44136953)
chr4 (400-448)||(44206905-44206952)
chr4 (400-447)||(38011455-38011502)
chr4 (242-312)||(1745442-1745512)
chr4 (400-448)||(5383830-5383877)
chr4 (400-448)||(20650199-20650247)
[»] chr2 (4 HSPs)
chr2 (400-446)||(39711495-39711541)
chr2 (404-446)||(4730908-4730949)
chr2 (404-445)||(36254682-36254723)
chr2 (400-448)||(18481911-18481958)
[»] chr8 (2 HSPs)
chr8 (404-445)||(14442519-14442560)
chr8 (400-444)||(10659105-10659149)
[»] scaffold0003 (1 HSPs)
scaffold0003 (401-448)||(353142-353189)
[»] chr5 (1 HSPs)
chr5 (404-447)||(12466260-12466303)
[»] scaffold0174 (1 HSPs)
scaffold0174 (400-446)||(30784-30829)
[»] chr7 (1 HSPs)
chr7 (402-447)||(28002850-28002895)
[»] chr3 (1 HSPs)
chr3 (402-447)||(35739980-35740025)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Complemental strand, 3709824 - 3709397
Alignment:
Q  11 gttgtgtagaaaacaacaatcaatgtgaagaagatttttacttatcactttattactgacgtgatatggtacacttatcaaattatccatcggtccacat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||    
T  3709824 gttgtgtagaaaacaacaatcaatgtgaagaagatttttacttatcactttattactcatgtgatttggtacacttatcaaattatccatcggtccacat 3709725  T
Q  111 atgacatcatatatttcatgcttaggcgaactcatgttctacaatttgttcatgtccatgcattctaccatgttcatacataacatatttgcatgtgttt 210  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||     
T  3709724 atgatatcatatattccatgcttaggcgaactcatgttctacaattttttgatgtccatgcattctaccatgttcatacataacatacttgcatgtgttc 3709625  T
Q  211 gcgtttacaaaaacctaccatacttgcatgctactaacgtattggactcatcccacaatataggttcttacgcgttgtttgacaactgttatgtttggtg 310  Q
     |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  3709624 acgtttacaaaaacctaacatacttacatgctactaacgtattggactcatcccacaatatgagttcttacgcgttgtttgacaactgttatgtttggtg 3709525  T
Q  311 gtatgaactctttgattgtctgatgtttaagttttgttgagatctgcaaatgtcaaggcttcatgtctgcctccactcaggtaccggtatgttggcactt 410  Q
    ||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3709524 gtacgaactctttgattgtctgatgtttcaggtttgttgagatctgcaaatgtcaaggcttcatgtctgcctccactcaggtaccggtatgttggcactt 3709425  T
Q  411 ggattgtgttactgtgttggcggtcaat 438  Q
    ||||||||||||||||||||||||||||    
T  3709424 ggattgtgttactgtgttggcggtcaat 3709397  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 433 - 527
Target Start/End: Complemental strand, 3707300 - 3707206
Alignment:
Q  433 gtcaatccattcgccaagttgaaaccatacatgttcttatatatgttcattcttaatcttttttgtaacttggtttcgcatccgtacatgggttt 527  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||  |||||||    
T  3707300 gtcaatccattcgccaagttgaaaccatacatgttcttaaatatgttcattcttcatcttttttgtaactcggtttcgcatccgtatgtgggttt 3707206  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 6257236 - 6257351
Alignment:
Q  243 actaacgtattggactcatcccacaatataggttcttacgcg-ttgtttgacaactgttatgtttggtggtatgaactctttgattgtctgatgtttaag 341  Q
    |||||| ||||||||||||||| | || |  ||||||||||| |||||||| ||||||| |||||||||||||||  | ||  ||| |||||| ||  ||    
T  6257236 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttga-aactgttgtgtttggtggtatgattttttcaattctctgatattccag 6257334  T
Q  342 ttttgttgagatctgca 358  Q
     ||||||||||||||||    
T  6257335 atttgttgagatctgca 6257351  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 8210089 - 8210132
Alignment:
Q  401 gttggcacttggattgtgttactgtgttggcggtcaatccattc 444  Q
    ||||||||||||||| || ||||||||||| |||||||||||||    
T  8210089 gttggcacttggattctgatactgtgttggtggtcaatccattc 8210132  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 31946389 - 31946434
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcg 445  Q
    |||||||||||||||| || ||| |||||||||| |||||||||||    
T  31946389 tgttggcacttggattttgataccgtgttggcgggcaatccattcg 31946434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 30625626 - 30625578
Alignment:
Q  401 gttggcacttggattgtgttactgtgttggcggtcaatccattcgccaa 449  Q
    |||| |||||| ||| |||||| |||||||||||| |||||||||||||    
T  30625626 gttgacacttgaattttgttaccgtgttggcggtcgatccattcgccaa 30625578  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 26759466 - 26759514
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  26759466 tgttggcacttggattttgttactgtgttggcggtcgatccattcgcca 26759514  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 26925070 - 26925024
Alignment:
Q  402 ttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  26925070 ttggcacttggattttgttactgtgttggcggtcgatccattcgcca 26925024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 18628922 - 18628874
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  18628922 tgttggcacttggattttgttaccgtgttggcggtcgatccattcgcca 18628874  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 33323992 - 33324040
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    ||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  33323992 tgttggcacttggatttcgttactgtgttggcggtcgatccattcgcca 33324040  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 11871520 - 11871568
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    |||||||||||||||| |||||| ||||| |||||| ||||||||||||    
T  11871520 tgttggcacttggattttgttaccgtgttagcggtcgatccattcgcca 11871568  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 2688290 - 2688245
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgc 446  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||    
T  2688290 tgttggcgcttggatt-tgttaccgtgttggcggtcaatccattcgc 2688245  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 18629010 - 18628960
Alignment:
Q  242 tactaacgtattggactcatcccacaatataggttcttacgcgttgtttga 292  Q
    |||| |||||||||||||||||| |||| |  |||||||||||||||||||    
T  18629010 tactgacgtattggactcatccctcaatctgagttcttacgcgttgtttga 18628960  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 23777134 - 23777181
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    |||||||||||||||| ||| || |||||||||||| ||||||||||||    
T  23777134 tgttggcacttggattttgt-accgtgttggcggtcgatccattcgcca 23777181  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 448
Target Start/End: Original strand, 32338357 - 32338404
Alignment:
Q  401 gttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  32338357 gttggcacttggattttgttaccatgttggcggtcaatccattcgcca 32338404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 44136906 - 44136953
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcc 447  Q
    |||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  44136906 tgttggcactaggattttgttaccgtgttggcggtcaatccattcgcc 44136953  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 44206952 - 44206905
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  44206952 tgttggcacttggatt-tgttaccgtgttggcggtcgatccattcgcca 44206905  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 38011502 - 38011455
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcc 447  Q
    |||||||||||||||| |||||| |||||| ||||| |||||||||||    
T  38011502 tgttggcacttggattttgttaccgtgttgacggtcgatccattcgcc 38011455  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 1745442 - 1745512
Alignment:
Q  242 tactaacgtattggactcatcccacaatataggttcttacgcgttgtttgacaactgttatgtttggtggt 312  Q
    ||||||||||||||||||||||| |||| |  ||||||||||||   |||  ||||||| |||||||||||    
T  1745442 tactaacgtattggactcatccctcaatctgagttcttacgcgtctcttggaaactgttgtgtttggtggt 1745512  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 5383830 - 5383877
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    ||||| |||||||||| |||||| |||||||||||| ||||||||||||    
T  5383830 tgttgacacttggatt-tgttaccgtgttggcggtcgatccattcgcca 5383877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 20650199 - 20650247
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    |||||||||||||||| |||||| |||||||| ||| |||| |||||||    
T  20650199 tgttggcacttggattttgttaccgtgttggcagtcgatccgttcgcca 20650247  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 39711541 - 39711495
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgc 446  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||    
T  39711541 tgttggcacttggattttgttaccgtgttggcggtctatccattcgc 39711495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 4730908 - 4730949
Alignment:
Q  404 ggcacttggattgtgttactgtgttggcggtcaatccattcgc 446  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  4730908 ggcacttggatt-tgttacggtgttggcggtcaatccattcgc 4730949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 36254682 - 36254723
Alignment:
Q  404 ggcacttggattgtgttactgtgttggcggtcaatccattcg 445  Q
    |||||||| ||| |||||| ||||||||||||||||||||||    
T  36254682 ggcacttgaattttgttaccgtgttggcggtcaatccattcg 36254723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 18481958 - 18481911
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    ||||||||||||||||  ||||| |||||||||||| ||||||||||||    
T  18481958 tgttggcacttggattc-gttaccgtgttggcggtcgatccattcgcca 18481911  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 445
Target Start/End: Complemental strand, 14442560 - 14442519
Alignment:
Q  404 ggcacttggattgtgttactgtgttggcggtcaatccattcg 445  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  14442560 ggcacttggattttgttaccgtgttggcggtcaatccattcg 14442519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 10659149 - 10659105
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattc 444  Q
    |||||||||||||||| |||||| ||||||| |||| ||||||||    
T  10659149 tgttggcacttggattttgttaccgtgttggtggtcgatccattc 10659105  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 448
Target Start/End: Complemental strand, 353189 - 353142
Alignment:
Q  401 gttggcacttggattgtgttactgtgttggcggtcaatccattcgcca 448  Q
    ||||||||||||||| ||||||  |||| |||||||||||||||||||    
T  353189 gttggcacttggattttgttaccatgttagcggtcaatccattcgcca 353142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 12466303 - 12466260
Alignment:
Q  404 ggcacttggattgtgttactgtgttggcggtcaatccattcgcc 447  Q
    |||||||||||| |||||||||||||| |||| |||||||||||    
T  12466303 ggcacttggattttgttactgtgttggaggtcgatccattcgcc 12466260  T

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Target: scaffold0174 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 30784 - 30829
Alignment:
Q  400 tgttggcacttggattgtgttactgtgttggcggtcaatccattcgc 446  Q
    |||||||||||||||| |||||| |||||| ||||||||||||||||    
T  30784 tgttggcacttggatt-tgttaccgtgttgacggtcaatccattcgc 30829  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 28002850 - 28002895
Alignment:
Q  402 ttggcacttggattgtgttactgtgttggcggtcaatccattcgcc 447  Q
    ||||||||| |||| || ||| ||||||||||||||||||||||||    
T  28002850 ttggcacttagattttgataccgtgttggcggtcaatccattcgcc 28002895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 35740025 - 35739980
Alignment:
Q  402 ttggcacttggattgtgttactgtgttggcggtcaatccattcgcc 447  Q
    |||||||||||||| || || |||||||||||||||||||| ||||    
T  35740025 ttggcacttggattttgataatgtgttggcggtcaatccatacgcc 35739980  T

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