View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11009_high_1 (Length: 637)
Name: NF11009_high_1
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 206 - 622
Target Start/End: Complemental strand, 32950939 - 32950493
Alignment:
| Q |
206 |
agagagctgaatggtatatgatcaaagctgaaattgaatttaaggatgctgtagaacaaaggcagagtgcccatgaaagaaagctgagggctgaagacca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32950939 |
agagagctgaatggtatatgatcaaagctgaaattgaatttaaggatgctgtagaacaaaggcagagtgcccatgaaagaaagctgagggctgaagacca |
32950840 |
T |
|
| Q |
306 |
aaagctgag---------------------agctgaagaaagaatgaggatcggtgaagagatagatttcgctgaagttcaaaatcttgaagataaaagg |
384 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32950839 |
aaagctgagggctgaaaaccaaaagctgagagctgaagaaagaatgaggatcggtgaagagatagatttcgctgaagttcaaaatcttgaagataaaagg |
32950740 |
T |
|
| Q |
385 |
aggaaagctaacatcgaaattctaaagctgagagacagaaagcggaaagctaaagacagaatgcagaaagctgaagaccgaaggcagaaagctaagataa |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32950739 |
aggaaagctaacatcgaaattctaaagctgagagacagaaagcggaaagctaaagacagaatgcagaaagctgaagaccgaaagcagaaagctaagataa |
32950640 |
T |
|
| Q |
485 |
ctgaagttcgaaagcagccagccacccaggatcactaaggcagcttaagtgtaaaagcagttggaggcttaagatgaagaaaatccatgtggtttatgtt |
584 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32950639 |
-tgaagttcgaaagaagccagccacccaggatcgctaaggcagcttaagtttaaaagcagttggaggcttaagatgaagaaaatccatgtggtttatgtt |
32950541 |
T |
|
| Q |
585 |
ttg----------gtcttttatttagatattgatttaactgctctctg |
622 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
32950540 |
ttggccctttatagtcttttatttaaatattgatttaactgctctctg |
32950493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 32951126 - 32951023
Alignment:
| Q |
19 |
gacagaatgacgaaacctgaagaggaggaattggctgaagttcaaatagagagagctgaattgagaatgattgaagctgaacatgaaattaagaaggctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32951126 |
gacagaatgacgaaacctgaagaggaggaattggctgaagttcaaatagagagagctgaattgagaatgattgaagctgaacatgaaattaagatggctg |
32951027 |
T |
|
| Q |
119 |
aata |
122 |
Q |
| |
|
|||| |
|
|
| T |
32951026 |
aata |
32951023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University