View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_high_10 (Length: 455)
Name: NF11009_high_10
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 30 - 443
Target Start/End: Original strand, 42548072 - 42548475
Alignment:
| Q |
30 |
taacaactcctcctttcttaacagtatcattgtgttaattcacatatcacaatagcatatttgagttctcttccttttattctcatttatcgttggtgtg |
129 |
Q |
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| T |
42548072 |
taacaactcctcctctcttaacagtatcattgtgttaattcacatatcacaatagcatagttgagttctcttccttttattctcatttatcgttggtgtg |
42548171 |
T |
|
| Q |
130 |
tgtg--gatagtatctagttctaattaattaaacttagatgtgttttgttatctgttttgtttagattaaattgcatttagtggagtgaattgatgactt |
227 |
Q |
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| T |
42548172 |
tgtgtggatagtatctaattctaattaattaaacttagatgtgtt------------ttgtttagattaaattgcatttagtggagtgaattgatgactt |
42548259 |
T |
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| Q |
228 |
atagattagatgatgaagaaggaagactcaaccaccctgttcatcagtaaactcattttcttctccttcttacagtttcgtacctctttctcagtctcat |
327 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42548260 |
atagattagacgatgaagaaggaagattcaaccaccctgttcatcagtaaactcattttcttctccttcttacagtttctcacctctttctcagtctcat |
42548359 |
T |
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| Q |
328 |
attcttcaactttcccatatgaagcacttcccacaaaatcaggttacctaccaataagtccaacctccacttcctccattttctacacattctatgaagc |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42548360 |
attcttcaactttcccatatgaagcacttcccacaaaatcaggttacctaccaataagtccaacctccacttcctccattttctacacattctatgaagc |
42548459 |
T |
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| Q |
428 |
acagaactccacttca |
443 |
Q |
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| T |
42548460 |
acagaactccacttca |
42548475 |
T |
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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 348 - 439
Target Start/End: Original strand, 33015795 - 33015886
Alignment:
| Q |
348 |
gaagcacttcccacaaaatcaggttacctaccaataagtccaacctccacttcctccattttctacacattctatgaagcacagaactccac |
439 |
Q |
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| T |
33015795 |
gaagcccttcccacaagatcaggttaccttccagtaagtcacacctccaattcctccattttctatacattctatgaagcacaaaactccac |
33015886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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