View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_high_12 (Length: 412)
Name: NF11009_high_12
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 18892045 - 18891708
Alignment:
| Q |
18 |
aataacagtgagtaaagtatccattgtactgtttggtacttaatgaaattcttctccatttcttgaaaagatgctgcatataacactt---cttcgtttc |
114 |
Q |
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| T |
18892045 |
aataacagtgagtaaagtatccattgtactgtttggtacttaatgaaattcttctccatttcttgaaaagatgctgcatataacacttcttcttcgtttc |
18891946 |
T |
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| Q |
115 |
cttcattttcttccaataaattcttctctaaggtatctatttccactacttcatccattgttgttttcataaaataattgtttgttcatactcttgcgtg |
214 |
Q |
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| T |
18891945 |
cttcattttcttccaataaattcttctctaaggtatctatttccactacttcatccattgttgttttcataaaataatt-------------------tg |
18891865 |
T |
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| Q |
215 |
ctactagttaccattcaaatgaatttcaactataaacaaatgaaaagtcaaagatgaaaataactccatcggctgtgttatgttgggcttctgaatttct |
314 |
Q |
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| T |
18891864 |
ctagtagctaccattcaaatgaatttcaactataaacaaatgaaaagtcaaagatgaaaataactccatcggctgtgttatgttgggcttctgaatttct |
18891765 |
T |
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| Q |
315 |
tttcacactctatctttacttaaatacaccacatatcttttgtatgatatttcctct |
371 |
Q |
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| T |
18891764 |
tttcacactctatctttacttaaatacaccgcatatcttttgtatgataattcctct |
18891708 |
T |
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