View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11009_high_17 (Length: 339)

Name: NF11009_high_17
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11009_high_17
NF11009_high_17
[»] chr5 (4 HSPs)
chr5 (74-318)||(4300914-4301153)
chr5 (102-318)||(4294377-4294592)
chr5 (43-73)||(26317829-26317859)
chr5 (16-74)||(22616493-22616551)
[»] chr2 (2 HSPs)
chr2 (4-74)||(34441900-34441970)
chr2 (43-79)||(4763622-4763658)
[»] chr8 (4 HSPs)
chr8 (4-73)||(28220934-28221003)
chr8 (4-67)||(23176742-23176805)
chr8 (4-74)||(4108891-4108961)
chr8 (43-76)||(16447036-16447069)
[»] chr3 (1 HSPs)
chr3 (16-73)||(47930657-47930714)
[»] chr4 (2 HSPs)
chr4 (4-79)||(2704506-2704581)
chr4 (43-75)||(35025769-35025801)
[»] scaffold0008 (1 HSPs)
scaffold0008 (45-77)||(267278-267310)
[»] chr7 (1 HSPs)
chr7 (43-75)||(241039-241071)
[»] chr6 (1 HSPs)
chr6 (43-79)||(1623279-1623315)
[»] chr1 (1 HSPs)
chr1 (43-75)||(2959742-2959774)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 74 - 318
Target Start/End: Complemental strand, 4301153 - 4300914
Alignment:
Q  74 taaaatgattacacaaatcaaaagcacaccactca----aatagttatccaattattgtttttaccataaataacaagtgaggacggtacttgaacagaa 169  Q
    |||||| ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4301153 taaaatcattacacaaatcaaaagcacaccactcattcaaatagttatccaattattgtttttaccataaataacaggtgaggacggtacttgaacagaa 4301054  T
Q  170 ttgttggcagaatttccagcaagaaatgatgggtggctctgagcaaatctgaaagcatagttgttatttttggggttttgagaatgagaggtagtagtag 269  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||          || ||||    
T  4301053 ttgttggcagaatttctagcaagaaatgatgggtggctctgagcaaatctgaaagcatagttgttatttttgtggtttcgaga---------ggttgtag 4300963  T
Q  270 ttccttcggaggaaaagaccatgatgtcctcgactttttcagctggaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4300962 ttccttcggaggaaaagaccatgatgtcctcgactttttcagctggaat 4300914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 102 - 318
Target Start/End: Complemental strand, 4294592 - 4294377
Alignment:
Q  102 ccactcaaatagttatccaattattgtttttaccataaataacaagtgaggacggtacttgaacagaattgttggcagaatttccagcaagaaatgatgg 201  Q
    |||||||||||| ||||||| |||| |||||||||||||||||| ||| ||| || | ||||| |||||||||||| ||||||  |||||||||||||||    
T  4294592 ccactcaaatagatatccaactatt-tttttaccataaataacaggtgtggatggcatttgaagagaattgttggctgaatttatagcaagaaatgatgg 4294494  T
Q  202 gtggctctgagcaaatctgaaagcatagttgttatttttggggttttgagaatgagaggtagtagtagttccttcggaggaaaagaccatgatgtcctcg 301  Q
    ||  |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| || | |||||||||||||| ||| |    
T  4294493 gttactctgagcaaatctgaaagcatagttgttattgttgtggttttgagaatgagaggtaggagtagttcctttggtgcaaaagaccatgatgcccttg 4294394  T
Q  302 actttttcagctggaat 318  Q
    |||||||||||||||||    
T  4294393 actttttcagctggaat 4294377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 73
Target Start/End: Original strand, 26317829 - 26317859
Alignment:
Q  43 tcattttcatgacttcatcatagaattttcc 73  Q
    |||||||||||||||||||||||||||||||    
T  26317829 tcattttcatgacttcatcatagaattttcc 26317859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 22616551 - 22616493
Alignment:
Q  16 attggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcct 74  Q
    ||||| ||||||||||||||       ||||||||||||||||| ||||||||||||||    
T  22616551 attggccatttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcct 22616493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 34441900 - 34441970
Alignment:
Q  4 aaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcct 74  Q
    ||||||| |||||||||||||||||||| |||       ||||||||||||||||| ||||||||||||||    
T  34441900 aaatattcaataattggtcatttaactttaccaaaaaagtcattttcatgacttcaccatagaattttcct 34441970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 4763658 - 4763622
Alignment:
Q  43 tcattttcatgacttcatcatagaattttcctaaaat 79  Q
    ||||||||||||||||||||||||||||||| |||||    
T  4763658 tcattttcatgacttcatcatagaattttccaaaaat 4763622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 28220934 - 28221003
Alignment:
Q  4 aaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcc 73  Q
    ||||||| ||| ||||||||||||||||||||       ||||||||||||||| |||||||||||||||    
T  28220934 aaatattcaatgattggtcatttaacttcaccagaaaagtcattttcatgactttatcatagaattttcc 28221003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 23176742 - 23176805
Alignment:
Q  4 aaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaa 67  Q
    ||||||| ||| ||||||||||||||||||||       ||||||||||||||||| |||||||    
T  23176742 aaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgacttcaccatagaa 23176805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 4108891 - 4108961
Alignment:
Q  4 aaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcct 74  Q
    ||||||| ||| |||||||||||||||| |||       ||||||||||||||||| |||| |||||||||    
T  4108891 aaatattcaatgattggtcatttaactttaccaaaaaagtcattttcatgacttcaccataaaattttcct 4108961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 16447036 - 16447069
Alignment:
Q  43 tcattttcatgacttcatcatagaattttcctaa 76  Q
    ||||||||||||||||| ||||||||||||||||    
T  16447036 tcattttcatgacttcaccatagaattttcctaa 16447069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 47930657 - 47930714
Alignment:
Q  16 attggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcc 73  Q
    ||||||||||||||||||||       ||||||||||||||||| |||||||||||||    
T  47930657 attggtcatttaacttcaccagaaaaatcattttcatgacttcaccatagaattttcc 47930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 2704581 - 2704506
Alignment:
Q  4 aaatatttaataattggtcatttaacttcaccnnnnnnntcattttcatgacttcatcatagaattttcctaaaat 79  Q
    ||||||| ||| |||| |||||||||||||||       ||||||||||||||||| |||| ||||||||| ||||    
T  2704581 aaatattcaatgattgatcatttaacttcaccagaaaagtcattttcatgacttcaccataaaattttccttaaat 2704506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 35025769 - 35025801
Alignment:
Q  43 tcattttcatgacttcatcatagaattttccta 75  Q
    ||||||||||||||||| |||||||||||||||    
T  35025769 tcattttcatgacttcagcatagaattttccta 35025801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 267310 - 267278
Alignment:
Q  45 attttcatgacttcatcatagaattttcctaaa 77  Q
    ||||||||||||||| |||||||||||||||||    
T  267310 attttcatgacttcaccatagaattttcctaaa 267278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 241039 - 241071
Alignment:
Q  43 tcattttcatgacttcatcatagaattttccta 75  Q
    ||||||||||||||||| |||||||||||||||    
T  241039 tcattttcatgacttcaccatagaattttccta 241071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 1623279 - 1623315
Alignment:
Q  43 tcattttcatgacttcatcatagaattttcctaaaat 79  Q
    |||||||||||||||||  ||||||||||||||||||    
T  1623279 tcattttcatgacttcactatagaattttcctaaaat 1623315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 2959774 - 2959742
Alignment:
Q  43 tcattttcatgacttcatcatagaattttccta 75  Q
    ||||||||||||||||| |||||||||||||||    
T  2959774 tcattttcatgacttcaccatagaattttccta 2959742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University