View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11009_high_20 (Length: 292)

Name: NF11009_high_20
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11009_high_20
NF11009_high_20
[»] chr5 (4 HSPs)
chr5 (1-276)||(5894601-5894881)
chr5 (1-59)||(31084334-31084392)
chr5 (1-53)||(13287395-13287447)
chr5 (1-45)||(12159963-12160007)
[»] chr8 (9 HSPs)
chr8 (1-55)||(29447104-29447158)
chr8 (1-49)||(4298886-4298934)
chr8 (1-55)||(22651987-22652041)
chr8 (1-55)||(28745509-28745563)
chr8 (1-53)||(2572052-2572104)
chr8 (1-48)||(8342983-8343030)
chr8 (1-48)||(20873080-20873127)
chr8 (2-48)||(18170483-18170529)
chr8 (2-48)||(18634051-18634097)
[»] chr7 (9 HSPs)
chr7 (1-55)||(7438717-7438771)
chr7 (1-59)||(9778511-9778569)
chr7 (1-53)||(6028636-6028688)
chr7 (1-49)||(11061076-11061124)
chr7 (1-48)||(9408335-9408382)
chr7 (8-59)||(32094010-32094061)
chr7 (1-59)||(5409826-5409884)
chr7 (1-55)||(11665434-11665488)
chr7 (1-55)||(24339653-24339707)
[»] chr6 (5 HSPs)
chr6 (1-48)||(403865-403912)
chr6 (1-48)||(426515-426562)
chr6 (1-55)||(5970102-5970156)
chr6 (1-59)||(10770664-10770722)
chr6 (1-55)||(16766708-16766762)
[»] chr4 (4 HSPs)
chr4 (1-59)||(12895106-12895164)
chr4 (1-55)||(24613695-24613749)
chr4 (1-47)||(6485613-6485659)
chr4 (1-59)||(21720497-21720555)
[»] chr3 (6 HSPs)
chr3 (1-53)||(39756247-39756299)
chr3 (1-57)||(49651778-49651834)
chr3 (1-48)||(1509550-1509597)
chr3 (1-48)||(55401086-55401133)
chr3 (1-34)||(35222499-35222532)
chr3 (1-49)||(10268486-10268534)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-48)||(46693-46740)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-48)||(17750-17797)
[»] chr2 (1 HSPs)
chr2 (1-48)||(30335428-30335475)
[»] chr1 (7 HSPs)
chr1 (1-48)||(22515888-22515935)
chr1 (1-48)||(22881617-22881664)
chr1 (1-48)||(38078662-38078709)
chr1 (1-59)||(1486699-1486757)
chr1 (1-47)||(32461465-32461511)
chr1 (1-53)||(24577182-24577234)
chr1 (1-49)||(40258933-40258981)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 5894881 - 5894601
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacaccggggcacatataatccaagaagtgttagtgctttatatta 100  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| ||| ||||||| ||| ||||| ||||||||||||||    
T  5894881 taatttgaaaaaatcatataatttaatctaactacaagtgtcggtgtcgtgtcggacaccgggacacgtataatctaaggagtgtcagtgctttatatta 5894782  T
Q  101 ttgaatcaaatca-----tacatatgatgagttgtgatttgttagcaggactatgtgtcgtctaagcctaataggagcgagagcacctagatcttgctgg 195  Q
    |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5894781 ttgaatcaaatcaaatcatacatatgatgagttgtgatttgttagcaggactatgtgtcgtctaagcctaataggagcgagagcacctagatcttgctgg 5894682  T
Q  196 ataaaacggactctcttgaatcatgcttgtttgtatgtttgttcatttggtgtttgtaagagacggtcactgtgtttggtg 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5894681 ataaaacggactctcttgaatcatgcttgtttgtatgtttgttcatttggtgtttgtaagagacggtcactgtgtttggtg 5894601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31084334 - 31084392
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 59  Q
    ||||||||||||||||||||||| ||| ||| ||||| ||||| |||| ||||||||||    
T  31084334 taatttgaaaaaatcacataattcaatgtaattacaagtgtcgatgtcgtgtcggacac 31084392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13287447 - 13287395
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 53  Q
    ||||||||||||||||||||||| | | ||||||||| |||||||||| ||||    
T  13287447 taatttgaaaaaatcacataattcagtgtaactacaagtgtcggtgtcgtgtc 13287395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12159963 - 12160007
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggt 45  Q
    |||||| |||||| ||||||||||||| ||| |||||||||||||    
T  12159963 taatttaaaaaaaacacataatttaatgtaattacaaatgtcggt 12160007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29447158 - 29447104
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 55  Q
    |||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||    
T  29447158 taatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcgg 29447104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4298934 - 4298886
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 49  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  4298934 taatttgaaaaaatcacataatttaatgtaattacaagtgtcggtgtca 4298886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22651987 - 22652041
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 55  Q
    ||||||||||||||||||||||| ||| ||| ||||| |||||||||| ||||||    
T  22651987 taatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcgg 22652041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28745509 - 28745563
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 55  Q
    |||||||||||| |||||||||| ||| ||||||||||||||| |||| ||||||    
T  28745509 taatttgaaaaattcacataattcaatgtaactacaaatgtcgatgtcgtgtcgg 28745563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2572104 - 2572052
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 53  Q
    ||||||||||||||||||||||||| | ||| ||||| |||||||||| ||||    
T  2572104 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtc 2572052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8342983 - 8343030
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  8342983 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 8343030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20873080 - 20873127
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  20873080 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 20873127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 18170529 - 18170483
Alignment:
Q  2 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  18170529 aatttgaaaaaattacataattcaatgtaattacaaatgtcggtgtc 18170483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 18634097 - 18634051
Alignment:
Q  2 aatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  18634097 aatttgaaaaaattacataattcaatgtaattacaaatgtcggtgtc 18634051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7438717 - 7438771
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 55  Q
    ||||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  7438717 taatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcgg 7438771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9778511 - 9778569
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 59  Q
    ||||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||||||    
T  9778511 taatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcgtgtcggacac 9778569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6028636 - 6028688
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 53  Q
    ||||||||||| || |||||||||||| ||| |||||||||||||||| ||||    
T  6028636 taatttgaaaatataacataatttaatgtaattacaaatgtcggtgtcgtgtc 6028688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11061124 - 11061076
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 49  Q
    ||||||||||||||||||||||||| | ||| ||||| |||||||||||    
T  11061124 taatttgaaaaaatcacataatttagtataattacaagtgtcggtgtca 11061076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9408382 - 9408335
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  9408382 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 9408335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 32094061 - 32094010
Alignment:
Q  8 aaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 59  Q
    |||||||||||||||| | | ||| |||||||||||||||| ||||||||||    
T  32094061 aaaaaatcacataattcagtgtaattacaaatgtcggtgtcgtgtcggacac 32094010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5409884 - 5409826
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 59  Q
    ||||||||||||||||||||||| | |  || ||||| |||||||||| ||||||||||    
T  5409884 taatttgaaaaaatcacataattcagtgcaattacaagtgtcggtgtcgtgtcggacac 5409826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11665488 - 11665434
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 55  Q
    ||||||||||||||||||||||| | ||||| || || ||||| |||||||||||    
T  11665488 taatttgaaaaaatcacataattcagtctaattataagtgtcgatgtcatgtcgg 11665434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24339653 - 24339707
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 55  Q
    ||||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||    
T  24339653 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 24339707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 403912 - 403865
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  403912 taatttgaaaaaatcacataatttagtgtaactacaagtgtcggtgtc 403865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 426562 - 426515
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||| ||| ||| ||||| ||||||||||    
T  426562 taatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgtc 426515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5970156 - 5970102
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 55  Q
    ||||||||||||||||||||||| | | ||| ||||||||| |||||| ||||||    
T  5970156 taatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcgg 5970102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10770722 - 10770664
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 59  Q
    ||||||||||||||||||||||| | | ||| ||||| |||||||||| |||| |||||    
T  10770722 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcagacac 10770664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16766708 - 16766762
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 55  Q
    ||||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||    
T  16766708 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 16766762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12895164 - 12895106
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 59  Q
    ||||||||||||||||||||||| ||  ||| ||||| |||||||||| ||||||||||    
T  12895164 taatttgaaaaaatcacataattcaaagtaattacaagtgtcggtgtcgtgtcggacac 12895106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24613749 - 24613695
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 55  Q
    |||||||| |||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  24613749 taatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcgg 24613695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6485659 - 6485613
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgt 47  Q
    ||||||||||||||||||||||||| | ||| ||||| |||||||||    
T  6485659 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgt 6485613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 21720555 - 21720497
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 59  Q
    |||||||| ||||||| |||||||||| |||||| | ||||||||||| ||| ||||||    
T  21720555 taatttgataaaatcatataatttaatgtaactatatatgtcggtgtcttgttggacac 21720497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 39756247 - 39756299
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 53  Q
    |||||| |||||||||||||||||||| ||| ||||| |||||||||| ||||    
T  39756247 taatttaaaaaaatcacataatttaatataattacaagtgtcggtgtcgtgtc 39756299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 49651834 - 49651778
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggac 57  Q
    ||||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||||    
T  49651834 taatttgaaaaaatcacataattcactgtaattacaagtgtcggtgtcgtgtcggac 49651778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1509550 - 1509597
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  1509550 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 1509597  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 55401086 - 55401133
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  55401086 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 55401133  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35222499 - 35222532
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaacta 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  35222499 taatttgaaaaaatcacataattcaatctaacta 35222532  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10268534 - 10268486
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 49  Q
    ||||||||||||||||||||||||| | ||| ||||| |||| ||||||    
T  10268534 taatttgaaaaaatcacataatttagtgtaattacaagtgtcagtgtca 10268486  T

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Target: scaffold0027 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 46693 - 46740
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||| | | ||| ||||||||||||||||    
T  46693 taatttgaaaaaatcacataattcagtgtaattacaaatgtcggtgtc 46740  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17797 - 17750
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  17797 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 17750  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30335428 - 30335475
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    |||||||||||||| |||||||||| | ||| ||||||||||||||||    
T  30335428 taatttgaaaaaatgacataatttagtgtaattacaaatgtcggtgtc 30335475  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22515935 - 22515888
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  22515935 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 22515888  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22881664 - 22881617
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  22881664 taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 22881617  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38078709 - 38078662
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 48  Q
    ||||||||||||||||||||||| ||| ||| ||||| ||||||||||    
T  38078709 taatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtc 38078662  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1486757 - 1486699
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 59  Q
    ||||||||||||||||||||||| | | ||| || || |||||||||| ||||||||||    
T  1486757 taatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacac 1486699  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32461511 - 32461465
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgt 47  Q
    ||||||||||||||||||||||||||| ||| ||||| ||| |||||    
T  32461511 taatttgaaaaaatcacataatttaatgtaattacaagtgttggtgt 32461465  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24577234 - 24577182
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 53  Q
    ||||||||||||||||||||||| | | ||| ||||| |||||||||| ||||    
T  24577234 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtc 24577182  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40258981 - 40258933
Alignment:
Q  1 taatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 49  Q
    ||||||||||||||||||||||| | | ||| ||||| |||||||||||    
T  40258981 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtca 40258933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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