View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11009_high_4 (Length: 582)

Name: NF11009_high_4
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11009_high_4
NF11009_high_4
[»] chr4 (10 HSPs)
chr4 (43-569)||(39580851-39581378)
chr4 (62-474)||(39544489-39544887)
chr4 (49-443)||(39521683-39522065)
chr4 (62-478)||(39525193-39525598)
chr4 (49-208)||(39576328-39576487)
chr4 (69-208)||(39511457-39511596)
chr4 (391-456)||(39511767-39511832)
chr4 (497-552)||(39522140-39522194)
chr4 (491-537)||(39511867-39511913)
chr4 (282-457)||(39576552-39576727)
[»] chr7 (1 HSPs)
chr7 (74-144)||(3331509-3331579)


Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 43 - 569
Target Start/End: Original strand, 39580851 - 39581378
Alignment:
Q  43 cagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgttt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39580851 cagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgttt 39580950  T
Q  143 ggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgtta 242  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39580951 ggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgtta 39581050  T
Q  243 ctttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaatt 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39581051 ctttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaatt 39581150  T
Q  343 gatgaagtatgtgtgttggggattatataatccaagcgagggaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaatt 442  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39581151 gatgaagtatgtgtgttggggattatataatccgagcgaggaaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaatt 39581250  T
Q  443 gccatggggagagagttgataattgtgtttgtttgaatga-nnnnnnnnaagctgtgatgactgctattcatagaagttagtagaagtagggagtgggag 541  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39581251 gccatggggagagagttgataattgtgtttgtttgaatgatttttttttaagctgtgatgactgctattcatagaagttagtagaagtagggagtgggag 39581350  T
Q  542 aagagaagggggagaccaatgaagaaga 569  Q
    |||||||||||| |||||||||||||||    
T  39581351 aagagaagggggggaccaatgaagaaga 39581378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 62 - 474
Target Start/End: Original strand, 39544489 - 39544887
Alignment:
Q  62 gaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgt 161  Q
    ||||| ||||||||||||| |||||| ||||||||| ||||||||  |||||||||||||| ||||||||| ||||||||||||| |||    ||||| |    
T  39544489 gaaacattgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacataccatgtaggtgttgtttggtatggtagaaaattcat 39544588  T
Q  162 agaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgttactttggagcttttgctgaa 261  Q
    || |||||| |||| |||||||  ||||||||||||||||||||||||         | | || ||||   ||||||||||||||||||||||| |||||    
T  39544589 aggaagactcggaatggaatatccttgctgtttggtagagaggtgaaa---------acactggtgat---tgacttgttactttggagctttttctgaa 39544676  T
Q  262 aactgttttcggataagtagggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgatgaagtatgtgtgttgg 361  Q
    |  |||||| || |||||||||||||||||||||||||||| ||||||| ||||| | || |||| ||||||||||||||||||||||||||||| ||||    
T  39544677 acttgtttttgggtaagtagggtttgattcaccaatataaaggttgttattttcattcacgtcaatatctgatccgcaattgatgaagtatgtgtcttgg 39544776  T
Q  362 ggattatataatccaagcgagggaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgcca-tggggagagagttg 460  Q
     |||  |   |||| || ||||||||||||||||||| |||||||||||||||||  |||| || |||||  ||||||| ||||| ||| ||||||||||    
T  39544777 tgatcgt---atccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaaatgatagtgtgttgaactgccattggagagagagttg 39544873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 49 - 443
Target Start/End: Original strand, 39521683 - 39522065
Alignment:
Q  49 gaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacg 148  Q
    |||||| ||||  |||||| |||||||||||| |||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||| |||| |||    
T  39521683 gaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtgttgcttggaacg 39521782  T
Q  149 gttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgttactttgg 248  Q
    ||||||||||| ||| |||| |||||| |||| ||  |||||||||||| ||||||||||         || |    || ||||||||||||||||||||    
T  39521783 gttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaa---------gaca---ctggtgattgacttgttactttgg 39521870  T
Q  249 ag---cttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgat 345  Q
    ||   |||| |||||| | | ||||||| |||| | ||||||||||||||||||||| ||||||| ||||| | || || | ||||||||| ||||||||    
T  39521871 agttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataaaggttgttattttcattcacgtcgatatctgatccacaattgat 39521970  T
Q  346 gaagtatgtgtgttggggattatataatccaagcgagggaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattg 443  Q
    ||||||||||| ||| ||||  |   |||| || ||||| ||||||||||||||||||||||||| |||||  || |||| ||||||  |||||||||    
T  39521971 gaagtatgtgtcttgaggatcgt---atccgagtgaggggaattgtaatgatgagaattgaagaaaaaaagcaaggagaaagatagagcgttgaattg 39522065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 62 - 478
Target Start/End: Original strand, 39525193 - 39525598
Alignment:
Q  62 gaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgt 161  Q
    |||||| ||||||||||||||||||| |||  |||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  39525193 gaaacggtgaattttgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttgtttggtacggttttgaactcgt 39525292  T
Q  162 agaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgttactttggagcttttgctgaa 261  Q
    | ||||| | |||| | |||||  |||||||||||||||||||||||             |   |||||||||||| ||| || ||||||||||||||||    
T  39525293 ataaagattcggaatgaaatatccttgctgtttggtagagaggtgaa------------ggcactgatgattgactggtttctatggagcttttgctgaa 39525380  T
Q  262 aactgttttcggataagtagggtttgattcaccaatataaacgttgttactttcagtaacatcaa------aatctgatccgcaattgatgaagtatgtg 355  Q
    |  |||||| || ||  | ||||||||||| ||||||||||| || |||||||||||||||  ||       ||||||||| ||| ||||||||||| ||    
T  39525381 acttgttttagggtagttggggtttgattccccaatataaactttattactttcagtaacagtaacgttgctatctgatccacaactgatgaagtatatg 39525480  T
Q  356 tgttggggattatataatccaagcgagggaaattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgccatggggagag 455  Q
    | ||   | | ||   |||| |||||||| || | ||||||||||||||||| ||||||||  ||||  | |||||| ||||||||||||||  ||||||    
T  39525481 tctt---gttcatcgtatccgagcgaggggaagtataatgatgagaattgaataagaaaagcaagtaagatgatagagtgttgaattgccat--ggagag 39525575  T
Q  456 agttgataattgtgtttgtttga 478  Q
    |||||| |||| |||||||||||    
T  39525576 agttgaaaattatgtttgtttga 39525598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 49 - 208
Target Start/End: Original strand, 39576328 - 39576487
Alignment:
Q  49 gaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacg 148  Q
    |||||| |||| ||||| ||||||||||||||||||||| ||||||||| ||||||||  ||||||| ||||||||||||| |||||||||||||||| |    
T  39576328 gaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtatg 39576427  T
Q  149 gttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa 208  Q
    ||    ||||||||| | || |  ||| |||| ||  ||||||||||||| |||||||||    
T  39576428 gtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaa 39576487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 39511457 - 39511596
Alignment:
Q  69 tgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaaga 168  Q
    ||||||||||||||||||| |||||||||  |||||||  || |||||||||||||||||| || ||||||||||| | |||||||||||||||  ||||    
T  39511457 tgaattttgcagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgttgtttgggatggttttgaattcgtaccaaga 39511556  T
Q  169 cttggaagggaatataattgctgtttggtagagaggtgaa 208  Q
     | |||| |||| ||  |||| ||||||||||||| ||||    
T  39511557 ttcggaacggaaaatccttgcagtttggtagagagatgaa 39511596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 391 - 456
Target Start/End: Original strand, 39511767 - 39511832
Alignment:
Q  391 taatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgccatggggagaga 456  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||||||    
T  39511767 taatgatgagaattgaagaagaaaaattagtaaaatgatagactgttgaattgtcattgggagaga 39511832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 552
Target Start/End: Original strand, 39522140 - 39522194
Alignment:
Q  497 tgatgactgctattcatagaagttagtagaagtagggagtgggagaagagaagggg 552  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  39522140 tgatgattgctattcatagaagttggtagaagtagggagt-ggagaagagaagggg 39522194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 537
Target Start/End: Original strand, 39511867 - 39511913
Alignment:
Q  491 aagctgtgatgactgctattcatagaagttagtagaagtagggagtg 537  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  39511867 aagctgtgatgactgctattcatagaagttagtacaagtaggcagtg 39511913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 457
Target Start/End: Original strand, 39576552 - 39576727
Alignment:
Q  282 ggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgatgaagtatgtgtgttggggattatataatccaagcga 381  Q
    |||||||||||||||||||||  || ||| ||||| | || || | ||||||||| ||||||||||||||||| | |||  |||  |||   || || |     
T  39576552 ggtttgattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtat---ccgagtgc 39576648  T
Q  382 gggaaattgtaatgatgagaattgaag---aagaaaagttagtagaacgatagactgttgaattgccatggggagagag 457  Q
     || || |||| |||||||||||||||   ||||||||  |||| || |||||| |||||||||||||| |||||||||    
T  39576649 agggaagtgtagtgatgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagag 39576727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 3331579 - 3331509
Alignment:
Q  74 tttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttgg 144  Q
    |||||||||||||| ||| ||||| ||||||||  || ||||||||||||||||||||| |||||||||||    
T  3331579 tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg 3331509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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