View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11009_high_6 (Length: 523)

Name: NF11009_high_6
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11009_high_6
NF11009_high_6
[»] chr8 (2 HSPs)
chr8 (16-507)||(2022146-2022637)
chr8 (160-197)||(2032973-2033010)
[»] chr2 (3 HSPs)
chr2 (16-215)||(28743247-28743446)
chr2 (16-215)||(28736621-28736820)
chr2 (16-197)||(28786194-28786375)


Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Original strand, 2022146 - 2022637
Alignment:
Q  16 gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022146 gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg 2022245  T
Q  116 aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022246 aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac 2022345  T
Q  216 cttttactgttttatggctccgaattctcctaatccagaagatttaccatcagtatgcaggtatgttagatgcaatatttaannnnnnnagattaactat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  2022346 cttttactgttttatggctccgaattctcctaatccagaagatttaccatcagtatgcaggtatgttagatgcaatatttaatttttttagattaactat 2022445  T
Q  316 tgcacaagcatagtgattataggaacaaataagacatcatgattgtgacacgatccttaatattcctgagaattatagtcaaatattgaaaactttgatg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022446 tgcacaagcatagtgattataggaacaaataagacatcatgattgtgacacgatccttaatattcctgagaattatagtcaaatattgaaaactttgatg 2022545  T
Q  416 tggtggctaagattgcgggtgattaggattagactattttgatatcatcttgaatttatttgactatatttacaaaattatccctaaattat 507  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2022546 tggtggccaagattgcgggtgattaggattagactattttgatattatcttgaatttatttgactatatttacaaaattatccctaaattat 2022637  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 2032973 - 2033010
Alignment:
Q  160 gtttataatagtaattttgatctttatagttcaccagc 197  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  2032973 gtttataatagtaattttgatatttatagctcaccagc 2033010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 28743446 - 28743247
Alignment:
Q  16 gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg 115  Q
    ||||||||||||||||||||| | ||||||||||||||     | | |||| | || || |||||  |||||||| ||||||||||||| |||||| |||    
T  28743446 gagacatggggtttctttcaagtggttaatcatggtattcctataaatgttcttgaggatatgaaagatggagtgattagattctttgaacaagatactg 28743347  T
Q  116 aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac 215  Q
    | ||||| | |||  | || ||  | |||| |   | ||| |||||||||||||||||||||||| | ||||||||||||||   || ||||||||||||    
T  28743346 aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcgcttaattggagggatac 28743247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 28736820 - 28736621
Alignment:
Q  16 gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg 115  Q
    ||||||||||||||||||||| | ||||||||||||||     | | |||| | || || |||||  |||||||| ||||||||||||| ||||||  ||    
T  28736820 gagacatggggtttctttcaagtggttaatcatggtattcctataaatgttcttgaggatatgaaagatggagtgattagattctttgaacaagatattg 28736721  T
Q  116 aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac 215  Q
    | ||||| | |||  | || ||  | |||| |   | ||| |||||||||||||||||||||||| | ||||||||||||||   || ||||||||||||    
T  28736720 aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac 28736621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 28786375 - 28786194
Alignment:
Q  16 gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg 115  Q
    ||||||||||||||||||||| | || |||||||| ||     ||| |||| | || || ||||  ||||||||| ||||||||||||| ||||||  ||    
T  28786375 gagacatggggtttctttcaagtggtcaatcatggcattcctttgaatgttcttgaggatatgagaaatggagtgattagattctttgaacaagatgttg 28786276  T
Q  116 aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagc 197  Q
    | ||||||| ||| |||||  | ||||||||| ||| ||| ||    || ||||| |||||| |||||||||||||| ||||    
T  28786275 aagtgaaaaaagagttatattctcgtgatccaatgaggccattttcatacaatagcaattttaatctttatagttcatcagc 28786194  T

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