View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11009_high_7 (Length: 496)

Name: NF11009_high_7
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11009_high_7
NF11009_high_7
[»] chr5 (6 HSPs)
chr5 (7-335)||(4158499-4158819)
chr5 (334-490)||(31155562-31155719)
chr5 (336-490)||(31155893-31156048)
chr5 (336-490)||(39761534-39761689)
chr5 (333-420)||(39760421-39760509)
chr5 (334-420)||(31156183-31156270)
[»] chr8 (4 HSPs)
chr8 (335-490)||(3068773-3068929)
chr8 (331-490)||(3305839-3305999)
chr8 (335-420)||(3069064-3069150)
chr8 (335-420)||(3305618-3305704)
[»] chr4 (14 HSPs)
chr4 (335-490)||(41315898-41316054)
chr4 (334-490)||(23254597-23254754)
chr4 (337-490)||(15874229-15874383)
chr4 (335-490)||(42305904-42306059)
chr4 (334-490)||(20878691-20878848)
chr4 (330-490)||(38484455-38484617)
chr4 (334-490)||(55893212-55893366)
chr4 (331-420)||(23254372-23254462)
chr4 (329-419)||(42306195-42306286)
chr4 (330-416)||(15874522-15874609)
chr4 (331-417)||(41316192-41316278)
chr4 (335-415)||(55893466-55893547)
chr4 (336-403)||(38485175-38485243)
chr4 (327-380)||(20878988-20879041)
[»] chr3 (13 HSPs)
chr3 (334-490)||(33794432-33794588)
chr3 (335-490)||(20124654-20124811)
chr3 (336-490)||(40560679-40560834)
chr3 (334-490)||(14783733-14783890)
chr3 (331-490)||(5047999-5048159)
chr3 (335-490)||(31724352-31724508)
chr3 (344-488)||(2439992-2440137)
chr3 (330-420)||(2439764-2439855)
chr3 (335-420)||(5048294-5048380)
chr3 (334-383)||(14784049-14784098)
chr3 (335-383)||(31724676-31724724)
chr3 (334-416)||(40560472-40560554)
chr3 (336-368)||(33794774-33794806)
[»] chr2 (6 HSPs)
chr2 (335-490)||(4731903-4732059)
chr2 (335-490)||(12414057-12414213)
chr2 (335-490)||(12426117-12426273)
chr2 (330-420)||(4731709-4731800)
chr2 (333-383)||(12413835-12413885)
chr2 (333-383)||(12425895-12425945)
[»] chr1 (10 HSPs)
chr1 (333-490)||(7709922-7710080)
chr1 (335-490)||(34492449-34492605)
chr1 (329-490)||(52331627-52331789)
chr1 (336-490)||(37646877-37647032)
chr1 (337-471)||(13618340-13618475)
chr1 (335-420)||(52331406-52331492)
chr1 (336-420)||(7709700-7709785)
chr1 (337-455)||(13618539-13618658)
chr1 (335-383)||(13618255-13618303)
chr1 (331-383)||(34492232-34492284)
[»] chr6 (14 HSPs)
chr6 (334-490)||(16766287-16766444)
chr6 (334-490)||(16368820-16368977)
chr6 (335-490)||(33746711-33746867)
chr6 (334-490)||(6851247-6851404)
chr6 (362-490)||(20582828-20582957)
chr6 (335-490)||(11242291-11242447)
chr6 (331-490)||(11246271-11246431)
chr6 (335-411)||(29846978-29847055)
chr6 (338-417)||(20582638-20582718)
chr6 (336-414)||(16766556-16766635)
chr6 (448-490)||(29846936-29846978)
chr6 (333-400)||(33746961-33747029)
chr6 (335-368)||(16368640-16368673)
chr6 (335-368)||(29846788-29846821)
[»] scaffold0428 (2 HSPs)
scaffold0428 (331-490)||(7485-7645)
scaffold0428 (337-420)||(7765-7849)
[»] chr7 (9 HSPs)
chr7 (331-490)||(24825780-24825940)
chr7 (335-490)||(32793003-32793159)
chr7 (335-488)||(11324270-11324424)
chr7 (335-483)||(37873416-37873565)
chr7 (334-483)||(37879077-37879227)
chr7 (335-420)||(24825558-24825644)
chr7 (336-420)||(32792783-32792868)
chr7 (331-402)||(9402555-9402627)
chr7 (333-383)||(11324050-11324100)
[»] scaffold0291 (2 HSPs)
scaffold0291 (333-490)||(11275-11433)
scaffold0291 (335-490)||(10953-11109)
[»] scaffold0184 (2 HSPs)
scaffold0184 (336-479)||(7183-7328)
scaffold0184 (335-420)||(7017-7103)
[»] scaffold0032 (2 HSPs)
scaffold0032 (328-420)||(33206-33299)
scaffold0032 (375-487)||(32959-33074)
[»] scaffold1408 (1 HSPs)
scaffold1408 (331-450)||(1739-1859)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 4158819 - 4158499
Alignment:
Q  7 ctatgtgtataatatttgagtgaagataagagagagggattcgagaactattagttgaattaatttatgcaacaagccaacaagggacaaaacaaggcag 106  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  4158819 ctatgtgtataatatttgagtgaagacaagagagagggattcgagaactattagttgaattaatttatgcaacaag--------ggacaaaacaaggcag 4158728  T
Q  107 agggaacctggataatgtgaatatgtannnnnnnaaagtagtttgatatttaatgatttactatttgattctttgttcttgcaaaacagcatgtggctaa 206  Q
    |||||||||||||||||||||| ||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4158727 agggaacctggataatgtgaatgtgtatttttttaaagtagcttgatatttaatgatttactatttgattctttgttcttgcaaaacagcatgtggctaa 4158628  T
Q  207 atatttctgtgagtttcacaaacttttttgagtgttaacacagggttaactgaaagagaatttttcggtgtgattttcatacttcacatgttttataggt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4158627 atatttctgtgagtttcacaaacttttttgagtgttaacacagggttaactgaaagagaatttttcggtgtgattttcatacttcacatgttttataggt 4158528  T
Q  307 ttgattgcacttttgatcattatatttta 335  Q
    ||||||||| |||| ||||||||||||||    
T  4158527 ttgattgcattttttatcattatatttta 4158499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 334 - 490
Target Start/End: Complemental strand, 31155719 - 31155562
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgt 432  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||       |||||    
T  31155719 taggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatgt 31155620  T
Q  433 cttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  31155619 cttttaaaaatacccttgggcccatttaagtcatgacaagtcaccaaaatgcctacgt 31155562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 336 - 490
Target Start/End: Original strand, 31155893 - 31156048
Alignment:
Q  336 ggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtct 434  Q
    |||||||||||||  ||||| |||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||| |||       |||||||    
T  31155893 ggcttaaatattgatctcgtccctgcaaatatgacacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatatgtct 31155992  T
Q  435 tttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  31155993 tttaaaaatacccctgggcccatttaagttatgacaagtcaccaaaatgcttacgt 31156048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 336 - 490
Target Start/End: Complemental strand, 39761689 - 39761534
Alignment:
Q  336 ggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtct 434  Q
    ||||||||||||||||| || ||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||| ||       | | |||    
T  39761689 ggcttaaatattgcacttgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaaatctatct 39761590  T
Q  435 tttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  39761589 tttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcttacgt 39761534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 333 - 420
Target Start/End: Original strand, 39760421 - 39760509
Alignment:
Q  333 ttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  39760421 ttaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaattagtccccgc 39760509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 334 - 420
Target Start/End: Complemental strand, 31156270 - 31156183
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttgg-tcttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    ||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31156270 taggcttaaatattgcattcgtccctacaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgc 31156183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 335 - 490
Target Start/End: Original strand, 3068773 - 3068929
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||       | ||||    
T  3068773 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 3068872  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  3068873 ttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgt 3068929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 331 - 490
Target Start/End: Complemental strand, 3305999 - 3305839
Alignment:
Q  331 ttttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnnta 429  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||||||  | ||||||||||||||||| ||||||||||||||||       |     
T  3305999 ttttaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcttccttgtaaaataaaaatttagaaatcagtccccgcaaaaaaatc 3305900  T
Q  430 tgtcttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3305899 tgtcttttaaaaatacccctgtgcccatttaagtcatgacaagtcaccaaaatgcctacgt 3305839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 335 - 420
Target Start/End: Complemental strand, 3069150 - 3069064
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3069150 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 3069064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 335 - 420
Target Start/End: Original strand, 3305618 - 3305704
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3305618 aggcttaaatattgaactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 3305704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 335 - 490
Target Start/End: Original strand, 41315898 - 41316054
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||       | ||||    
T  41315898 aggcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 41315997  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41315998 ttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgt 41316054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 334 - 490
Target Start/End: Complemental strand, 23254754 - 23254597
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgt 432  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||       | |||    
T  23254754 taggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 23254655  T
Q  433 cttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||||| |||||||    
T  23254654 cttttaaaaatactcctgggctcatttaagtcatgacaagtcaccaaaatacctacgt 23254597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 337 - 490
Target Start/End: Original strand, 15874229 - 15874383
Alignment:
Q  337 gcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtctt 435  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||       | ||||||    
T  15874229 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatttgtctt 15874328  T
Q  436 ttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||| || |||||||| |||||||||||||||||||||||||||    
T  15874329 ttaaaaatacccctgggcgcatttaaggcatgacaagtcaccaaaatgcctacgt 15874383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 335 - 490
Target Start/End: Original strand, 42305904 - 42306059
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||       | ||||    
T  42305904 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtcctcgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 42306003  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  42306004 ttttaaaaatacccctg-tcccatttaagtcatgacaagtcaccaaaatgcctacgt 42306059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 334 - 490
Target Start/End: Original strand, 20878691 - 20878848
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgt 432  Q
    |||||||||| ||| ||||| | ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||       | | |    
T  20878691 taggcttaaacattccactcatccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctat 20878790  T
Q  433 cttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20878791 cttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgt 20878848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 330 - 490
Target Start/End: Original strand, 38484455 - 38484617
Alignment:
Q  330 attttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc-nnnnnnn 427  Q
    ||||||||||||||||||||||||||  ||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||||   ||            
T  38484455 attttaggcttaaatattgcactcgtctctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtctttgcaaaaaaaa 38484554  T
Q  428 tatgtcttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    | ||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  38484555 tctgtcttttaaaaatatccctgggtccatttaagtcatgacaagtcaccaaaatgcctacgt 38484617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 334 - 490
Target Start/End: Original strand, 55893212 - 55893366
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgt 432  Q
    |||||||||||||||||| |||  |||||||||||  ||||||||||||||||  |||||||||||||||||||||||   |||||||       | |||    
T  55893212 taggcttaaatattgcacccgtctctgcaaatatggcccgtttaagttttggttattgtaaaataaaaattcagaaat---tccccgcaaaaaaatctgt 55893308  T
Q  433 cttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  55893309 cttttaaaaatagccctgggctcatttaagtcatgacaagtcaccaaaatgcctacgt 55893366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 23254372 - 23254462
Alignment:
Q  331 ttttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23254372 tttttggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 23254462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 329 - 419
Target Start/End: Complemental strand, 42306286 - 42306195
Alignment:
Q  329 tattttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccg 419  Q
    |||||||||||||||||||| |||||| ||| ||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42306286 tattttaggcttaaatattgaactcgtccctccaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccg 42306195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 416
Target Start/End: Complemental strand, 15874609 - 15874522
Alignment:
Q  330 attttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtcc 416  Q
    |||| |||||||| |||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  15874609 atttaaggcttaagtattgcactcgtccctgcaaatatgccccgtttaagttttggtctttgtaaaataaaaattcagaaatcagtcc 15874522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 417
Target Start/End: Complemental strand, 41316278 - 41316192
Alignment:
Q  331 ttttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccc 417  Q
    ||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||||||| |||||||||||||| |||||    
T  41316278 ttttaggcttaaatattgcactcgtccctgcaaatatggttcgtttaagttttggtccttgtaaaat-aaaattcagaaatccgtccc 41316192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 55893547 - 55893466
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtc 415  Q
    ||||||||||||||||||||| |||| |||||||   ||||||||||||||| |||| ||||||||||||||||||||||||    
T  55893547 aggcttaaatattgcactcgtccctgtaaatatggctcgtttaagttttggtccttgaaaaataaaaattcagaaatcagtc 55893466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 403
Target Start/End: Complemental strand, 38485243 - 38485175
Alignment:
Q  336 ggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaatt 403  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||| || | ||||||| |||||||    
T  38485243 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaaaaaaatt 38485175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 20879041 - 20878988
Alignment:
Q  327 tatattttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagt 380  Q
    |||||||  |||||||||||| ||||||| ||||||||||||  ||||||||||    
T  20879041 tatatttatggcttaaatattacactcgtccctgcaaatatggcccgtttaagt 20878988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 334 - 490
Target Start/End: Original strand, 33794432 - 33794588
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgt 432  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||       | |||    
T  33794432 taggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc-aaaaaatctgt 33794530  T
Q  433 cttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33794531 cttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgt 33794588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 335 - 490
Target Start/End: Original strand, 20124654 - 20124811
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||       ||||||    
T  20124654 aggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatgtc 20124753  T
Q  434 ttttaaaaatacccct-gagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||    
T  20124754 ttttaaaaatacccctggggcccatttaagtaatgacaagtcaccaaaatgcctacgt 20124811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 336 - 490
Target Start/End: Complemental strand, 40560834 - 40560679
Alignment:
Q  336 ggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtct 434  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||       | |||||    
T  40560834 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtct 40560735  T
Q  435 tttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||| |||||||||||||||||||| |||| ||||| |||||||    
T  40560734 tttaaaaatacccctgggcccatttaagtcatgacaaatcactaaaatacctacgt 40560679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 334 - 490
Target Start/End: Original strand, 14783733 - 14783890
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgt 432  Q
    ||||||||||||||||||| || ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||       | |||    
T  14783733 taggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatttgt 14783832  T
Q  433 cttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    | ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  14783833 cgtttaaaaatgcccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgt 14783890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 331 - 490
Target Start/End: Original strand, 5047999 - 5048159
Alignment:
Q  331 ttttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttgg-tcttgtaaaataaaaattcagaaatcagtccccgcnnnnnnnta 429  Q
    ||||||||||||||||||||||||| | || ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||       |     
T  5047999 ttttaggcttaaatattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgcgaaaaaatc 5048098  T
Q  430 tgtcttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    | ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  5048099 tatcttttaaaaatacccctgggtccatttaagtaatgacaagtcaccaaaatgcctacgt 5048159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 335 - 490
Target Start/End: Original strand, 31724352 - 31724508
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| | ||||||||||  |||||||| |||||||| |||||||||||||||||||||||||||||||||       | ||||    
T  31724352 aggcttaaatattgcactcgtccatgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatttgtc 31724451  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  31724452 ttttaaaaatacccttggacccatttaagtcatgacaagtcaccaaaatgcctacgt 31724508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 344 - 488
Target Start/End: Complemental strand, 2440137 - 2439992
Alignment:
Q  344 tattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtcttttaaaaa 442  Q
    |||||||||||| | || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||       | |||||||||||||    
T  2440137 tattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtcttttaaaaa 2440038  T
Q  443 tacccctgagcccatttaagtcatgacaagtcaccaaaatgcctac 488  Q
    |||||||| | |||||||||| ||||||||||||||||||||||||    
T  2440037 tacccctgggtccatttaagtaatgacaagtcaccaaaatgcctac 2439992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 330 - 420
Target Start/End: Original strand, 2439764 - 2439855
Alignment:
Q  330 attttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    |||||||||||||||||||||||||| ||||||||||||  |||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  2439764 attttaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaaatcaatccccgc 2439855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 335 - 420
Target Start/End: Complemental strand, 5048380 - 5048294
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||||| || |||||||||||||||||||||||||||||||    
T  5048380 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaaatcagtccccgc 5048294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 14784098 - 14784049
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagtttt 383  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  14784098 taggcttaaatattgcactcgtccctgcaaatatgacccgtttaagtttt 14784049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 31724724 - 31724676
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagtttt 383  Q
    ||||||||||||||||||||| | ||||||||||  |||||||||||||    
T  31724724 aggcttaaatattgcactcgtccttgcaaatatggcccgtttaagtttt 31724676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 416
Target Start/End: Original strand, 40560472 - 40560554
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtcc 416  Q
    |||||||||||||||||| ||| ||||||||||||   ||||| | |||| || | ||||||| ||||||||||||||||||||    
T  40560472 taggcttaaatattgcacccgtccctgcaaatatgcctcgttttaattttagtccctgtaaaa-aaaaattcagaaatcagtcc 40560554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 33794806 - 33794774
Alignment:
Q  336 ggcttaaatattgcactcgttcctgcaaatatg 368  Q
    |||||||||||||||||||| ||||||||||||    
T  33794806 ggcttaaatattgcactcgtccctgcaaatatg 33794774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 335 - 490
Target Start/End: Complemental strand, 4732059 - 4731903
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||       ||||||    
T  4732059 aggcttaaatattgcactcatccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatgtc 4731960  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||    
T  4731959 ttttaaaaatatccctgggcccatttaagtcatgacaagtcaccaaaatgtctacgt 4731903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 335 - 490
Target Start/End: Complemental strand, 12414213 - 12414057
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||  | ||||||||||||||||||||||||||||||||||       | ||||    
T  12414213 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 12414114  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  12414113 ttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgt 12414057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 335 - 490
Target Start/End: Complemental strand, 12426273 - 12426117
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||  | ||||||||||||||||||||||||||||||||||       | ||||    
T  12426273 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 12426174  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  12426173 ttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgt 12426117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 420
Target Start/End: Original strand, 4731709 - 4731800
Alignment:
Q  330 attttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    ||||| |||||||||||||||||||| ||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||| |||||    
T  4731709 atttttggcttaaatattgcactcgtccctgcaaatatggcccgtttaagatttggtccttgtaaaataaaaattcagaaatcagttcccgc 4731800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 12413835 - 12413885
Alignment:
Q  333 ttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagtttt 383  Q
    |||||||||||||||||||| || ||||||||||||  |||||||||||||    
T  12413835 ttaggcttaaatattgcacttgtccctgcaaatatggcccgtttaagtttt 12413885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 12425895 - 12425945
Alignment:
Q  333 ttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagtttt 383  Q
    |||||||||||||||||||| || ||||||||||||  |||||||||||||    
T  12425895 ttaggcttaaatattgcacttgtccctgcaaatatggcccgtttaagtttt 12425945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 333 - 490
Target Start/End: Complemental strand, 7710080 - 7709922
Alignment:
Q  333 ttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatg 431  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||  ||       | ||    
T  7710080 ttaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagtccttgcaaaaaaatctg 7709981  T
Q  432 tcttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7709980 tcttttaaaaatacccctgtgcccatttaagtcatgacaagtcaccaaaatgcctacgt 7709922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 335 - 490
Target Start/End: Complemental strand, 34492605 - 34492449
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||| |||||       | | ||    
T  34492605 aggcttaaatattgcactcgttcctgcaaatatggtctgtttaagttttggtccttgtaaaataaaaattcagacatcagttcccgcaaaaaaatctatc 34492506  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34492505 ttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgt 34492449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 329 - 490
Target Start/End: Complemental strand, 52331789 - 52331627
Alignment:
Q  329 tattttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnn 427  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||||||||||||| | ||||||||||||||||| ||||||||||||||||           
T  52331789 tattttaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttgatccttgtaaaataaaaatttagaaatcagtccccgcaaaaaaa 52331690  T
Q  428 tatgtcttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    | | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  52331689 tttatcttttaaaaatacccctgggcccatttaagtcatgacaagtcatcaaaatgcctacgt 52331627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 336 - 490
Target Start/End: Complemental strand, 37647032 - 37646877
Alignment:
Q  336 ggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtct 434  Q
    ||||||||||||||| ||||| |||||||||||   |||||||||||||||| |||||||||||||||||| ||||||||||  ||       | |||||    
T  37647032 ggcttaaatattgcattcgtttctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcaaaaatcagtccgtgcaaaaaaatctgtct 37646933  T
Q  435 tttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37646932 tttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgt 37646877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 337 - 471
Target Start/End: Complemental strand, 13618475 - 13618340
Alignment:
Q  337 gcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtctt 435  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||||||| ||||||||||||||| |||||||||| |||| ||       | ||||||    
T  13618475 gcttaaatattgcattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatcccagcaaaaaaatctgtctt 13618376  T
Q  436 ttaaaaatacccctgagcccatttaagtcatgacaa 471  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13618375 ttaaaaatacccctgggcccatttaagtcatgacaa 13618340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 335 - 420
Target Start/End: Original strand, 52331406 - 52331492
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52331406 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 52331492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 420
Target Start/End: Original strand, 7709700 - 7709785
Alignment:
Q  336 ggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    ||||||||||||| |||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7709700 ggcttaaatattgaactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 7709785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 337 - 455
Target Start/End: Complemental strand, 13618658 - 13618539
Alignment:
Q  337 gcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtctt 435  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||| ||       | ||||||    
T  13618658 gcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatcccagcaaaaaaatctgtctt 13618559  T
Q  436 ttaaaaatacccctgagccc 455  Q
    ||||||||||||||| ||||    
T  13618558 ttaaaaatacccctgggccc 13618539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 13618255 - 13618303
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagtttt 383  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  13618255 aggcttaaatattgcactcttccctgcaaatatgacccgtttaagtttt 13618303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 34492232 - 34492284
Alignment:
Q  331 ttttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagtttt 383  Q
    |||| |||||||||||||||||||| ||||||||||||  |||||||||||||    
T  34492232 tttttggcttaaatattgcactcgtccctgcaaatatggcccgtttaagtttt 34492284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 7e-50; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 334 - 490
Target Start/End: Original strand, 16766287 - 16766444
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgt 432  Q
    |||||||||||||||||||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||       | |||    
T  16766287 taggcttaaatattgcactcgtccctgcaaatatgacccatttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 16766386  T
Q  433 cttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||    
T  16766387 cttttaaaaatacccttgggcccatttaagtcatggcaagtcaccaaaatgcctacgt 16766444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 334 - 490
Target Start/End: Complemental strand, 16368977 - 16368820
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgt 432  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||  |       | |||    
T  16368977 taggcttaaatattgcactcgtccctgcaaatatgatccgtttaagttttggtccgtgtaaaatgaaaattcagaaatcagtccctacaaaaaaatttgt 16368878  T
Q  433 cttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  16368877 cttttaaaaatacccctgggcccatttaaatcatgacaagtcaccaaaatgcctacgt 16368820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 335 - 490
Target Start/End: Original strand, 33746711 - 33746867
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtct-tgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||||| |||  |||||||||||||||||||||||| |||| ||       | ||||    
T  33746711 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccatgtaaaataaaaattcagaaatcaatccctgcaaaaaaatctgtc 33746810  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33746811 ttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgt 33746867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 334 - 490
Target Start/End: Original strand, 6851247 - 6851404
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgt 432  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |         |||    
T  6851247 taggcttaaatattgcactcgtccatgcaaatatgatccgtttaagttttggtctttgtaaaataaaaattcagaaatcagttcccacaaaaaaaactgt 6851346  T
Q  433 cttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||    
T  6851347 cttttaaaaatacccctggatccatttaagtcatgacaagtcaccaaaatgcttacgt 6851404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 362 - 490
Target Start/End: Complemental strand, 20582957 - 20582828
Alignment:
Q  362 aaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtcttttaaaaatacccctgagcccattta 460  Q
    |||||||  ||||||||||||||||| |||||||||||||||| ||||||||| ||||||       | ||||||||||||||| ||||| |||||||||    
T  20582957 aaatatggcccgtttaagttttggtccttgtaaaataaaaatttagaaatcagaccccgcaaaaaaatctgtcttttaaaaatatccctgggcccattta 20582858  T
Q  461 agtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||| ||||||||||||||    
T  20582857 agtcatgacaagtcatcaaaatgcctacgt 20582828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 335 - 490
Target Start/End: Original strand, 11242291 - 11242447
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| ||   |||||||   | ||||||||||| || |||||||||||||||||||||||||||||||||       | ||||    
T  11242291 aggcttaaatattgcactcgtccccataaatatggctcatttaagttttgatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 11242390  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||| | ||  |||||||||||||||||| || ||||||||||||||||    
T  11242391 ttttaaaaatactcatggacccatttaagtcatgacaggtgaccaaaatgcctacgt 11242447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 331 - 490
Target Start/End: Complemental strand, 11246431 - 11246271
Alignment:
Q  331 ttttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnnta 429  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||||||||||  || ||||||||||||||||||| |||||||||||| |       |     
T  11246431 ttttaggcttaaatattgcactcatccctgcaaatatgatctgtttaagtttgagtccttgtaaaataaaaattcacaaatcagtccccacaaaaaaatt 11246332  T
Q  430 tgtcttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||| ||||||||||    | ||||||||||||| | || ||||||||||||||||    
T  11246331 tgtcttttataaatacccctagatctatttaagtcatgaaaggttaccaaaatgcctacgt 11246271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 335 - 411
Target Start/End: Complemental strand, 29847055 - 29846978
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtct-tgtaaaataaaaattcagaaatc 411  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||    
T  29847055 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtctctgtaaaataaaaattcagaaatc 29846978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 20582638 - 20582718
Alignment:
Q  338 cttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccc 417  Q
    |||||||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20582638 cttaaatattgcactcgtccctacaaatatagtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 20582718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 16766635 - 16766556
Alignment:
Q  336 ggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagt 414  Q
    ||||||||||||||| |||| ||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||    
T  16766635 ggcttaaatattgcaatcgtccctgcaaatatggcccgtttatgttttggtccttgtaaaataaaaattcagaaatcagt 16766556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 448 - 490
Target Start/End: Complemental strand, 29846978 - 29846936
Alignment:
Q  448 ctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  29846978 ctgagcccatttaagtcatgacaagtcaccaaattgcctacgt 29846936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 33747029 - 33746961
Alignment:
Q  333 ttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaa 400  Q
    ||||||||||||||||||| ||| ||||||||||||  ||||||||||||| || ||||||||| ||||    
T  33747029 ttaggcttaaatattgcacccgtccctgcaaatatggcccgtttaagttttcgtccttgtaaaaaaaaa 33746961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 16368640 - 16368673
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatg 368  Q
    ||||||||||||||||||||| ||||||||||||    
T  16368640 aggcttaaatattgcactcgtccctgcaaatatg 16368673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 29846788 - 29846821
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatg 368  Q
    ||||||||||||||||||||| ||||||||||||    
T  29846788 aggcttaaatattgcactcgtccctgcaaatatg 29846821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 331 - 490
Target Start/End: Original strand, 7485 - 7645
Alignment:
Q  331 ttttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnnta 429  Q
    ||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||| |||||||       |     
T  7485 ttttatgcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgcaaaaaaatc 7584  T
Q  430 tgtcttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7585 tgtcttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgt 7645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 7849 - 7765
Alignment:
Q  337 gcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    ||||||||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7849 gcttaaatattgcactcgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 7765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 331 - 490
Target Start/End: Complemental strand, 24825940 - 24825780
Alignment:
Q  331 ttttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnnta 429  Q
    |||| |||||||||||||||||||| ||||||||||||  |||||||||||||||| |||| |||||||||||||||||||||||||||||       |     
T  24825940 tttttggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgaaaaataaaaattcagaaatcagtccccgcaaaaaaatc 24825841  T
Q  430 tgtcttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  24825840 tgtcttttaaaaatacccctgggcccatttaagtcataacaagtcaccaaaatgcctacgt 24825780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 335 - 490
Target Start/End: Complemental strand, 32793159 - 32793003
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| |||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||| ||       | ||||    
T  32793159 aggcttaaatattgcactcgtccctgcaaatatagcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaaatctgtc 32793060  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  32793059 ttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgt 32793003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 335 - 488
Target Start/End: Complemental strand, 11324424 - 11324270
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    |||||||||||||||| |||| ||||||||||||   |||||||||||||||| ||||||||||||||||||||||||| || ||||       | ||||    
T  11324424 aggcttaaatattgcattcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaaatcaatctccgcaaaaaaatctgtc 11324325  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctac 488  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  11324324 ttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctac 11324270  T

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Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 335 - 483
Target Start/End: Original strand, 37873416 - 37873565
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||| ||       | ||||    
T  37873416 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaattctgtc 37873515  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatg 483  Q
    ||||||||||||||||| |||||||||| | |||||| ||||||||||||    
T  37873516 ttttaaaaatacccctgggcccatttaattgatgacaggtcaccaaaatg 37873565  T

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Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 334 - 483
Target Start/End: Complemental strand, 37879227 - 37879077
Alignment:
Q  334 taggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgt 432  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| ||       | |||    
T  37879227 taggcttaaatattgtactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcaatccctgcaaaaaattctgt 37879128  T
Q  433 cttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatg 483  Q
    |||||||||||||||||| |||||||||| | |||||| ||||||||||||    
T  37879127 cttttaaaaatacccctgggcccatttaattgatgacaggtcaccaaaatg 37879077  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 335 - 420
Target Start/End: Original strand, 24825558 - 24825644
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    ||||||||||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  24825558 aggcttaaatattgcactcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaaatcagtctccgc 24825644  T

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Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 336 - 420
Target Start/End: Original strand, 32792783 - 32792868
Alignment:
Q  336 ggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    |||||||||||||||||||| | ||||||||||  |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  32792783 ggcttaaatattgcactcgtccttgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcaatccccgc 32792868  T

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Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 9402555 - 9402627
Alignment:
Q  331 ttttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaat 402  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||    
T  9402555 ttttaggtttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaat 9402627  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 383
Target Start/End: Original strand, 11324050 - 11324100
Alignment:
Q  333 ttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagtttt 383  Q
    ||||| ||||||||||||||||| ||||||||||||  ||| |||||||||    
T  11324050 ttaggtttaaatattgcactcgtccctgcaaatatggcccgattaagtttt 11324100  T

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Target: scaffold0291 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 333 - 490
Target Start/End: Complemental strand, 11433 - 11275
Alignment:
Q  333 ttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatg 431  Q
    ||||||||||||||||||||||| |||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||||| |||       | ||    
T  11433 ttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatctg 11334  T
Q  432 tcttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||    
T  11333 tcttttaaaaatacccctgggcccatttaggttatgacaagtcatcaaaatgcctacgt 11275  T

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Target: scaffold0291; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 335 - 490
Target Start/End: Original strand, 10953 - 11109
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc 433  Q
    ||||||||||||||||||||| ||||||||||||  |||||||| ||||||| |||||||||||||||||||||||||||||| |||       | ||||    
T  10953 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatctgtc 11052  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaaaatgcctacgt 490  Q
    ||||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||    
T  11053 ttttaaaaatacccctgggcccatttaggttatgacaagtcatcaaaatgcctacgt 11109  T

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Target: scaffold0184 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 336 - 479
Target Start/End: Complemental strand, 7328 - 7183
Alignment:
Q  336 ggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntatgtc- 433  Q
    ||||||||||||| | |||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||       | ||||     
T  7328 ggcttaaatattggattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtct 7229  T
Q  434 ttttaaaaatacccctgagcccatttaagtcatgacaagtcaccaa 479  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  7228 ttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaa 7183  T

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Target: scaffold0184; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 335 - 420
Target Start/End: Original strand, 7017 - 7103
Alignment:
Q  335 aggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  7017 aggcttaaatattgcactcgttcctgcaaatatggtccgtttaagttttggtccttataaaataaaaattcagaaatcaatccccgc 7103  T

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Target: scaffold0032 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 328 - 420
Target Start/End: Complemental strand, 33299 - 33206
Alignment:
Q  328 atattttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgc 420  Q
    |||||| ||| ||||||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  33299 atatttaaggtttaaatattgcactcgtccctgcaaatatggtccgtttatgttttggtccttgtaaaataaaaattcagaaatcagtccccgc 33206  T

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Target: scaffold0032; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 375 - 487
Target Start/End: Original strand, 32959 - 33074
Alignment:
Q  375 ttaagttttggtc-ttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntat--gtcttttaaaaatacccctgagcccatttaagtcatgacaa 471  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||        ||  ||||||||||||||||||||  ||||| |||||||||||||    
T  32959 ttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaaaatctgtcttttaaaaatacccctggacccatataagtcatgacaa 33058  T
Q  472 gtcaccaaaatgccta 487  Q
    ||||||||||||||||    
T  33059 gtcaccaaaatgccta 33074  T

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Target: scaffold1408 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 331 - 450
Target Start/End: Original strand, 1739 - 1859
Alignment:
Q  331 ttttaggcttaaatattgcactcgttcctgcaaatatgatccgtttaagttttggt-cttgtaaaataaaaattcagaaatcagtccccgcnnnnnnnta 429  Q
    ||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||| |||||||       |     
T  1739 ttttatgcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgcaaaaaaatc 1838  T
Q  430 tgtcttttaaaaatacccctg 450  Q
    |||||||||||||||||||||    
T  1839 tgtcttttaaaaatacccctg 1859  T

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