View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_low_11 (Length: 454)
Name: NF11009_low_11
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 437
Target Start/End: Complemental strand, 43102227 - 43101796
Alignment:
| Q |
14 |
agaccaaggggtggcttctaccatcatttgattcctctgccccagatgtctagctaaactacccagggcatgttgtcctcccattgaagatgggataatc |
113 |
Q |
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| T |
43102227 |
agaccaaggggtggcttctaccatcatttgattcctctgccccagatgtctagctaaactacccagggcatgtagtcctcccattgaagatgggataatc |
43102128 |
T |
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| Q |
114 |
tgggattgtttgacatggtcctttccatttgctcttttacttgacatttttcttctagaatcatttcactgaggttcctgttacttcggtcattgtaaaa |
213 |
Q |
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| T |
43102127 |
tgggattgtttgacatggtcctttccatttgctcttttacttgacatttttcttctagaatcatttcactgaggtttctgttacttcggtcattgtaaaa |
43102028 |
T |
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| Q |
214 |
agttggtcttatttcatttacagcttttcaggataatgttgcatcaagaggtagttgtcttttaacatttactctctctggatgaagggtctgttggttg |
313 |
Q |
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| T |
43102027 |
agttggtcttatttcatttacagcttttcaggataatgttgcatcaagaggtagttgtcttttaacatttact--ctctggatgaagggtctgttggttg |
43101930 |
T |
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| Q |
314 |
tgcacttttacaccattagatcaagtttagtttgaaagatatatcaattggctactatttttagattcctggtttcggtctccaattttcaaaat----- |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43101929 |
tgcacttttacaccattagatcaagtttagtttgaaagatatatcaaatggctactatttttagattcctggtttcggtctccaattttcaaaatattta |
43101830 |
T |
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| Q |
409 |
-----tttcccacctatgcatgcttaatgtgatg |
437 |
Q |
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| T |
43101829 |
aaaaatttcccacctatgcatgcttaatgtgatg |
43101796 |
T |
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