View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11009_low_14 (Length: 411)

Name: NF11009_low_14
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11009_low_14
NF11009_low_14
[»] chr7 (10 HSPs)
chr7 (18-402)||(22524935-22525299)
chr7 (19-405)||(22534567-22534934)
chr7 (276-402)||(21218469-21218596)
chr7 (47-149)||(35205922-35206024)
chr7 (53-162)||(21210466-21210575)
chr7 (47-146)||(21218709-21218808)
chr7 (355-402)||(20057827-20057874)
chr7 (355-397)||(19645455-19645497)
chr7 (356-397)||(19358206-19358247)
chr7 (357-397)||(19350832-19350872)
[»] chr4 (1 HSPs)
chr4 (279-403)||(2911254-2911379)
[»] scaffold0128 (1 HSPs)
scaffold0128 (276-402)||(4319-4446)
[»] chr5 (2 HSPs)
chr5 (282-402)||(42298299-42298420)
chr5 (354-399)||(23087049-23087094)
[»] chr8 (1 HSPs)
chr8 (355-398)||(27618723-27618766)
[»] chr2 (4 HSPs)
chr2 (356-402)||(18908534-18908580)
chr2 (357-400)||(21021044-21021087)
chr2 (357-398)||(20712292-20712333)
chr2 (357-397)||(18913287-18913327)
[»] scaffold0242 (2 HSPs)
scaffold0242 (72-170)||(13707-13805)
scaffold0242 (72-170)||(22542-22640)
[»] chr6 (1 HSPs)
chr6 (359-397)||(6942715-6942753)
[»] scaffold0354 (1 HSPs)
scaffold0354 (83-148)||(7469-7534)
[»] scaffold0097 (1 HSPs)
scaffold0097 (357-398)||(16131-16172)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 22525299 - 22524935
Alignment:
Q  18 agaacatgtttgtgtcttgaagggcttactttgtttttatcatgatataaagggaaccgattttctgatatggcaaatgaaagaatttcgagatgataag 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||||   |||    
T  22525299 agaacatgtttgtgtcttgaagggcttcctttgtttttatcatgacataaagggaaccgattttatgatatggcaaatgaagaaatttcgagat---aag 22525203  T
Q  118 tcttggatcccgttccttaaatttagctatcaaaatattcaaatgaatcatgaagatcgagctatgaaatttttcgtagctcactgttaatattaagacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||  | |||||||||| ||||||||||||||    
T  22525202 tcttggatcccgttccttaaatttagctatcaaaatattcaaatgaatcatgaa--------------attggtagtagctcacttttaatattaagacc 22525117  T
Q  218 attattgcatctttctcagaatggggatacgctagtattgaaaagcaaccaagaagatcgagcaattctctataaccggagataactaacaaagcaaaga 317  Q
    ||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  22525116 atta---catctttctgagaatggggatacgatagtattgaaaagcaaccaagaagatcgagcaattctctataaccggagagaactagcaaagcaaaga 22525020  T
Q  318 aaactagaattaacaaaaagatacgttggttaatggtggattatgttgaaagcttggtttcaccttcttgaaagtaagttcttct 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22525019 aaactagaattaacaaaaagatacgttggttaatggtggattatgttgaaagcttggtttcaacttcttgaaagtaagttcttct 22524935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 22534567 - 22534934
Alignment:
Q  19 gaacatgtttgtgtcttgaagggcttactttgtttttatcatgatataaagggaaccgattttctgatatggcaaatgaaagaatttcgagatgataagt 118  Q
    ||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||| | |||||||||||| | |||||| ||||||| ||||    
T  22534567 gaacatgtttgtgtcctgaagggcgtcctttgtttttatcatgacataaagggaaccgattttatcatatggcaaatggaggaatttggagatgaaaagt 22534666  T
Q  119 cttggatcccgttccttaaatttagctatcaaaatattcaaatgaatcatgaagatcgagctatgaaatttttcgtagctcactgttaatattaagacca 218  Q
    ||||||  |  ||  || |||| |||||||||||||||  | |||||              ||||||||||||||||||||||| |||||||||||||||    
T  22534667 cttggacacaattagttcaattcagctatcaaaatattggagtgaat--------------tatgaaatttttcgtagctcacttttaatattaagacca 22534752  T
Q  219 ttattgcatctttctcagaatggggatacgctagtattgaaaagcaaccaagaagatcgagcaattctctataaccggagataactaacaaagcaaagaa 318  Q
    ||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  22534753 tt---gcatctttctgagaatggggatacgctagtattgaaaagcaaccaagaagatcgagcaattctttataaccgga--taactaacaaagcaaagaa 22534847  T
Q  319 aactagaattaacaaaaagatacgttggttaatggtggattatgttgaaagcttggtttcaccttcttgaaagtaagttcttctctc 405  Q
    |||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  22534848 aactagaattaacagaaagatacattggttaatggtcgattatgtcgaaagcttggtttcaccttcttgaaagtaagttcttatctc 22534934  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 21218596 - 21218469
Alignment:
Q  276 cgagcaattctctataaccggagataactaacaaagcaaagaaaactagaattaacaaaaagatacgttggttaatggtg---gattatgttgaaagctt 372  Q
    ||||| ||| |||||||||| |||  |||||||||| ||||||| |||||||||||||||||||| ||||||     ||    |||||||| ||||||||    
T  21218596 cgagcgattatctataaccgaaga--actaacaaagtaaagaaagctagaattaacaaaaagataagttggtcctcagtctatgattatgtcgaaagctt 21218499  T
Q  373 ggtttcaccttcttgaaagtaagttcttct 402  Q
    ||||||| ||||||||||||||||||||||    
T  21218498 ggtttcaacttcttgaaagtaagttcttct 21218469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 35206024 - 35205922
Alignment:
Q  47 tttgtttttatcatgatataaagggaaccgattttctgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagcta 146  Q
    ||||||||||||||||| | || ||||| |||||| | |||||| | |||| ||||||| || |||| ||||||||||  |  |||||||||||||||||    
T  35206024 tttgtttttatcatgatttcaatggaactgattttgttatatggaagatgacagaatttggaaatgacaagtcttggactcaattccttaaatttagcta 35205925  T
Q  147 tca 149  Q
    |||    
T  35205924 tca 35205922  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 21210575 - 21210466
Alignment:
Q  53 tttatcatgatataaagggaaccgattttctgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagctatcaaaa 152  Q
    ||||||||||| | || ||||| |||||| | |||||| | |||| | | ||| ||||||| ||||||||||  |  |||||||||||||||||||| ||    
T  21210575 tttatcatgatttcaacggaactgattttgttatatggaagatgacaaagtttggagatgacaagtcttggactctattccttaaatttagctatcacaa 21210476  T
Q  153 tattcaaatg 162  Q
    ||||||||||    
T  21210475 tattcaaatg 21210466  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 21218808 - 21218709
Alignment:
Q  47 tttgtttttatcatgatataaagggaaccgattttctgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagcta 146  Q
    ||||||||||||| ||| | || ||||| |||||  | |||||||||||||  |||||| ||||||||||||||||||  |  ||||| |||||||||||    
T  21218808 tttgtttttatcacgatttcaatggaactgatttggttatatggcaaatgacggaatttggagatgataagtcttggactcaattcctcaaatttagcta 21218709  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 402
Target Start/End: Complemental strand, 20057874 - 20057827
Alignment:
Q  355 ggattatgttgaaagcttggtttcaccttcttgaaagtaagttcttct 402  Q
    |||||||||||||||||||| |||| ||| |||| |||||||||||||    
T  20057874 ggattatgttgaaagcttggcttcaacttgttgatagtaagttcttct 20057827  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 19645497 - 19645455
Alignment:
Q  355 ggattatgttgaaagcttggtttcaccttcttgaaagtaagtt 397  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||    
T  19645497 ggattatgttgaaagtttggtttcaacttgttgaaagtaagtt 19645455  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 19358206 - 19358247
Alignment:
Q  356 gattatgttgaaagcttggtttcaccttcttgaaagtaagtt 397  Q
    ||||||||||||||||| |||||| | |||||||||||||||    
T  19358206 gattatgttgaaagcttagtttcatcctcttgaaagtaagtt 19358247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 19350872 - 19350832
Alignment:
Q  357 attatgttgaaagcttggtttcaccttcttgaaagtaagtt 397  Q
    |||||||||||||||| |||||| | |||||||||||||||    
T  19350872 attatgttgaaagcttagtttcaacctcttgaaagtaagtt 19350832  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 279 - 403
Target Start/End: Original strand, 2911254 - 2911379
Alignment:
Q  279 gcaattctctataaccggagataactaacaaagcaaagaaaactagaattaacaaaaagatacgttggtt---aatggtggattatgttgaaagcttggt 375  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||||| |||| | ||||||||||||    |||   |||||||| |||||||||||    
T  2911254 gcaattctctataaccggaga--actaacagagcaaagaaaactagaattgacaacaggatacgttggttttctatgaacgattatgtagaaagcttggt 2911351  T
Q  376 ttcaccttcttgaaagtaagttcttctc 403  Q
     ||| |||||||||||||||||||||||    
T  2911352 atcaacttcttgaaagtaagttcttctc 2911379  T

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Target: scaffold0128 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 402
Target Start/End: Original strand, 4319 - 4446
Alignment:
Q  276 cgagcaattctctataaccggagataactaacaaagcaaagaaaactagaattaacaaaaagatacgttggtt---aatggtggattatgttgaaagctt 372  Q
    ||||| ||||| ||||||| ||||  || ||||||||||||||||||| | | ||||||||||||||||||||   ||||   |||||||| ||||||||    
T  4319 cgagcgattctttataacctgaga--acaaacaaagcaaagaaaactacattcaacaaaaagatacgttggttcccaatgaaagattatgtcgaaagctt 4416  T
Q  373 ggtttcaccttcttgaaagtaagttcttct 402  Q
    ||||||| ||||||||||||||||||||||    
T  4417 ggtttcaacttcttgaaagtaagttcttct 4446  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 402
Target Start/End: Original strand, 42298299 - 42298420
Alignment:
Q  282 attctctataaccggagataactaacaaagcaaagaaaactagaattaacaaaaagatacgttggtt---aatggtggattatgttgaaagcttggtttc 378  Q
    ||||||||||||| ||||  || |||| ||||||||||||||| ||||||| ||||||| ||||||    ||||   |||||||| ||||||||||||||    
T  42298299 attctctataacctgaga--acaaacagagcaaagaaaactaggattaacagaaagatatgttggtcctcaatgaaagattatgtcgaaagcttggtttc 42298396  T
Q  379 accttcttgaaagtaagttcttct 402  Q
    | ||||||||||||||||||||||    
T  42298397 aacttcttgaaagtaagttcttct 42298420  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 23087049 - 23087094
Alignment:
Q  354 tggattatgttgaaagcttggtttcaccttcttgaaagtaagttct 399  Q
    |||||||||||||||||||||||||  ||| ||| |||||||||||    
T  23087049 tggattatgttgaaagcttggtttcgacttgttggaagtaagttct 23087094  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 27618723 - 27618766
Alignment:
Q  355 ggattatgttgaaagcttggtttcaccttcttgaaagtaagttc 398  Q
    |||||||||||||||||||||||||  |||||||||||||||||    
T  27618723 ggattatgttgaaagcttggtttcaatttcttgaaagtaagttc 27618766  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 18908580 - 18908534
Alignment:
Q  356 gattatgttgaaagcttggtttcaccttcttgaaagtaagttcttct 402  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||    
T  18908580 gattatgttgaaagcttggtttcaacctcttgaaagtaagtttttct 18908534  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 400
Target Start/End: Complemental strand, 21021087 - 21021044
Alignment:
Q  357 attatgttgaaagcttggtttcaccttcttgaaagtaagttctt 400  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||    
T  21021087 attatgttgaaagtttggtttcaacttgttgaaagtaagttctt 21021044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 20712333 - 20712292
Alignment:
Q  357 attatgttgaaagcttggtttcaccttcttgaaagtaagttc 398  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||    
T  20712333 attatgtcgaaagcttggtttcaacttgttgaaagtaagttc 20712292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 18913327 - 18913287
Alignment:
Q  357 attatgttgaaagcttggtttcaccttcttgaaagtaagtt 397  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  18913327 attatgttgaaagcttggtatcaacctcttgaaagtaagtt 18913287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 13805 - 13707
Alignment:
Q  72 aaccgattttctgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagctatcaaaatattcaaatgaatcatga 170  Q
    |||||||||||| |||||||| ||||| |||||  || ||||| | |||||||  | ||| |||||| | || ||||||||| ||||||| ||||||||    
T  13805 aaccgattttcttatatggcagatgaaggaattaggaaatgatgaatcttggactcagtttcttaaaataaggtatcaaaatcttcaaataaatcatga 13707  T

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Target: scaffold0242; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 22640 - 22542
Alignment:
Q  72 aaccgattttctgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagctatcaaaatattcaaatgaatcatga 170  Q
    |||||||||||| |||||||| ||||| |||||  || ||||| | |||||||  | ||| |||||| | || ||||||||| ||||||| ||||||||    
T  22640 aaccgattttcttatatggcagatgaaggaattaggaaatgatgaatcttggactcagtttcttaaaataaggtatcaaaatcttcaaataaatcatga 22542  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 6942753 - 6942715
Alignment:
Q  359 tatgttgaaagcttggtttcaccttcttgaaagtaagtt 397  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  6942753 tatgttgaaagcttggtatcaacttcttgaaagtaagtt 6942715  T

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Target: scaffold0354 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 7469 - 7534
Alignment:
Q  83 tgatatggcaaatgaaagaatttcgagatgataagtcttggatcccgttccttaaatttagctatc 148  Q
    |||||||||||||||| |||||| ||| |||| |||||||| | |  ||||||||| |||||||||    
T  7469 tgatatggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattagctatc 7534  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 16172 - 16131
Alignment:
Q  357 attatgttgaaagcttggtttcaccttcttgaaagtaagttc 398  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||    
T  16172 attatgtcgaaagcttggtttcaacttgttgaaagtaagttc 16131  T

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