View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_low_16 (Length: 382)
Name: NF11009_low_16
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 141 - 311
Target Start/End: Original strand, 30515596 - 30515766
Alignment:
| Q |
141 |
aactaattactaacttttgtcaataagaaaaacacattggaacccatgatctcatatttcatggctaagtttttatgttaccatgtatgtaccgtcattt |
240 |
Q |
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| T |
30515596 |
aactaattactaacttttgtcattaagaaaaacacattggaacccatgatctcatatttcatggctaagtttttttgttaccatgtatgtaccgtcattt |
30515695 |
T |
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| Q |
241 |
tatgatgactaatctccgtcaataaattcattgtgcacacattgtggattctctcctcccaatccgacttt |
311 |
Q |
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| T |
30515696 |
catgatgactaatctccgtcaataaattcattgtgcacacattgtggattctctcctcccaatcggacttt |
30515766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 30515389 - 30515480
Alignment:
| Q |
5 |
gagcagcacagagatcgttgtatg--gtaccgtttgtcataaggtccaagaaaattcttctaactatattgattggttgcatagtatccaaa |
94 |
Q |
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| T |
30515389 |
gagcagcatagagatcgtcgcatgtggtacggtttgccataaggtccgagaaaattcttctaactatattgattggttgcatagtatccaaa |
30515480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 30515362 - 30515406
Alignment:
| Q |
304 |
ccgactttgttttattggtaatctcctgagcatcatagagatcgt |
348 |
Q |
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| T |
30515362 |
ccgactttgttttattggtaatctcctgagcagcatagagatcgt |
30515406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 30515525 - 30515553
Alignment:
| Q |
112 |
taaaccacgcttgaatccgtgttgggtaa |
140 |
Q |
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| T |
30515525 |
taaaccacgcttgaatccgtgttgggtaa |
30515553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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