View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_low_17 (Length: 342)
Name: NF11009_low_17
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 80 - 331
Target Start/End: Original strand, 8840008 - 8840256
Alignment:
| Q |
80 |
aaattcatcatacactagtaacaaaactcctcaaatcccatgtattcattcctctgaatcctctgaatcatacgtgatattcctactccacctatagaca |
179 |
Q |
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| T |
8840008 |
aaattcatcatatactagtagcaaaactcctcaaatcccatgtattcattattctgaatcctctgaatcatgcgtgatattcctactccacctatagaca |
8840107 |
T |
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| Q |
180 |
accatacaagtcatgaaagccatgttgtaagcaagtagatttcatagagaaatatgcatagggaaatgaaagcttaaaatgtaaaaattaattagcaatc |
279 |
Q |
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| T |
8840108 |
accatacaagt---gaaagccatgttgtaagcaagtagatttcatagagaaatatgcatagtgaaatgaaagcttaaaatgtaaaaactaattagcaatc |
8840204 |
T |
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| Q |
280 |
gtcatatttttctctgcaatgcgattattatgacgtttttagaggtctctgc |
331 |
Q |
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| T |
8840205 |
gtcatatttttctccgcaatgcgattattatgacgtttttagaggtctctgc |
8840256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 8839966 - 8840019
Alignment:
| Q |
17 |
atacatgaacctctatatgcatcaaatatatacttgtagaaaaaattcatcata |
70 |
Q |
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| T |
8839966 |
atacatgaacctctctatgcatcatatatatacttgtagaaaaaattcatcata |
8840019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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