View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11009_low_19 (Length: 310)

Name: NF11009_low_19
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11009_low_19
NF11009_low_19
[»] chr1 (1 HSPs)
chr1 (1-294)||(47119787-47120077)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 47120077 - 47119787
Alignment:
Q  1 atgattcattgtgattatgcataagctaattagttacccgtggtattcttcggcggtgatatcatagcctagtgcgcgtaaaccggcgagggtgctaccg 100  Q
    ||||| || ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47120077 atgatccactgtgattatgcataagctaa---gttacccgtggtattcttcggcggtgatatcatagcctagtgcgcgtaaaccggcgagggtgctaccg 47119981  T
Q  101 tgggatttaaagagttcaaccctcagggtggaggctttggattgtgagaaaccacatttttccattagaaagagatcgatatttttcttaacagcagctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47119980 tgggatttaaagagttcaaccctcagggtggaggctttggattgtgagaaaccacatttttccattagaaagagatcgatatttttcttaacggcagctc 47119881  T
Q  201 cgattccggtgttggatgggtacaaggtatcatccaaatctgtttgataaacaattgaattagagaaaatgatattgaatgagtttgtaaattg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47119880 cgattccggtgttggatgggtacaaggtatcatccaaatctgtttgataaacaattgaattagagaaaatgatattgaatgagtttgtaaattg 47119787  T

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