View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11009_low_2 (Length: 590)
Name: NF11009_low_2
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 9248817 - 9248518
Alignment:
| Q |
17 |
agcaacaatgcttcaagacaatttacaaaaggatccaacaacaatcatcacaaccagtttgcaatattggatatagttatggctgctcttaagaaatcta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9248817 |
agcaacaatgcttcaagacaatttacaaaaggatccaacaacaatcatcaaaaccagtttgcaatattggatatagttatggctgctcttaagaaatcta |
9248718 |
T |
|
| Q |
117 |
ttgtaacttgcagtgtggagagggaggatgtttcttccttagatattagctggccaactgaagtgagacacgtgtcacatgttacttttgatagattcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9248717 |
ttgtaacttgcagtgtggagagggaggatgtttcttccttagatattagctggccaactgaagtgagacacgtgtcacatgttacttttgatagattcaa |
9248618 |
T |
|
| Q |
217 |
tggttttcttggtttgccttctgagtttcagcctgaggttcctacaagggtacctagtgccaggtcaattttttatatctctattgttcttagaacatga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9248617 |
tggttttcttggtttgccttctgagtttcagcctgaggttcctacaagggtacctagtgccaggtcaattttttatatctctattgttcttagaacatga |
9248518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 546 - 581
Target Start/End: Complemental strand, 9248281 - 9248246
Alignment:
| Q |
546 |
ctaatcatgtatgtttagtgtttgtttgtgtctctg |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9248281 |
ctaatcatgtatgtttagtgtttgtttgtgtctctg |
9248246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University