View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11009_low_22 (Length: 273)

Name: NF11009_low_22
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11009_low_22
NF11009_low_22
[»] chr4 (13 HSPs)
chr4 (13-255)||(5553547-5553789)
chr4 (13-255)||(5852633-5852875)
chr4 (13-227)||(5570778-5570992)
chr4 (15-250)||(5582962-5583197)
chr4 (13-229)||(5565138-5565354)
chr4 (64-229)||(5858453-5858618)
chr4 (19-255)||(5885974-5886210)
chr4 (13-201)||(5559347-5559535)
chr4 (81-252)||(3749358-3749529)
chr4 (65-201)||(5605508-5605644)
chr4 (65-229)||(5894845-5895009)
chr4 (65-250)||(5847764-5847949)
chr4 (99-202)||(5538940-5539043)
[»] chr8 (1 HSPs)
chr8 (116-229)||(1485695-1485808)
[»] scaffold0454 (1 HSPs)
scaffold0454 (116-229)||(876-990)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 5553547 - 5553789
Alignment:
Q  13 atgaaccatggagattgttgttgtgtgctaagtcaataacggagagtttttcaatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5553547 atgaaccatggagattgttgttgtgtgctaagtcaataacggagagtttttcaatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgt 5553646  T
Q  113 aagactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagt 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5553647 aagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagt 5553746  T
Q  213 tttgatagggaagaatctagtggccctgctagatcacagttat 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5553747 tttgatagggaagaatctagtggccctgctagatcacagttat 5553789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 5852875 - 5852633
Alignment:
Q  13 atgaaccatggagattgttgttgtgtgctaagtcaataacggagagtttttcaatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgt 112  Q
    ||||||||||||||||| |||||| || || ||||||||| || ||| || |||| ||||||||||| |||||||||||||| || |||||||||  ||     
T  5852875 atgaaccatggagattgctgttgtatgttatgtcaataacagacagtgttccaatctgaaagatcttctgtggaaatgtaccagtcaatccacaatctga 5852776  T
Q  113 aagactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagt 212  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||    
T  5852775 aagactaagggtggtcaggttttgaaaattagcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgactgataggttccttagt 5852676  T
Q  213 tttgatagggaagaatctagtggccctgctagatcacagttat 255  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  5852675 tttgatagggaagaatcaagtggccctgctagatcacatttat 5852633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 5570992 - 5570778
Alignment:
Q  13 atgaaccatggagattgttgttgtgtgctaagtcaataacggagagtttttcaatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgt 112  Q
    |||||||||||||||||| ||||  || ||| |||||||  || | | || ||||||||||||| |||||||||||||||||||| |||||||||||||     
T  5570992 atgaaccatggagattgtagttgaatgataaatcaataaatgacaatgttccaatttgaaagatattttgtggaaatgtacctgtcaatccacaagatga 5570893  T
Q  113 aagactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagt 212  Q
    |||||| |||||||| || ||||  ||||||| |||||||||||| ||  |||| || |||| ||||| ||||||||||||||| |||||||| ||||||    
T  5570892 aagactgagggtggttagttttttaaaattggaaaatgtttctggcactagggatgagaaatagttcccatcaagaataatgactgataggttctttagt 5570793  T
Q  213 tttgatagggaagaa 227  Q
     ||| ||||||||||    
T  5570792 cttgttagggaagaa 5570778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 5583197 - 5582962
Alignment:
Q  15 gaaccatggagattgttgttgtgtgctaagtcaataacggagagtttttcaatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgtaa 114  Q
    |||||||||||||||| ||||   | |||||||||||  ||||   || |||||||||||||  ||| ||||||| |||| || ||||||||||||| ||    
T  5583197 gaaccatggagattgtagttgaaggataagtcaataaatgagaacgttccaatttgaaagatggtttttggaaatttaccagtcaatccacaagatgcaa 5583098  T
Q  115 gactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagttt 214  Q
    |||| |||||||| |  |||| |||||||| |||||||| ||| || ||||| ||||||||||||| ||||||||||||||| |||||||| |||||| |    
T  5583097 gactgagggtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttcccatcaagaataatgactgataggttctttagtct 5582998  T
Q  215 tgatagggaagaatctagtggccctgctagatcaca 250  Q
    || |||||||||||| || || |||| |||||||||    
T  5582997 tgttagggaagaatcaaggggacctgatagatcaca 5582962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 5565138 - 5565354
Alignment:
Q  13 atgaaccatggagattgttgttgtgtgctaagtcaataacggagagtttttcaatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgt 112  Q
    |||||||||||||||||| |||   || |||||||||||| || | | ||||||| ||||| || ||||||||||||||||| || || ||||||  |      
T  5565138 atgaaccatggagattgtagttaaatgataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctac 5565237  T
Q  113 aagactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagt 212  Q
    |||||| ||||||||||||||||  |||||||||||||||| ||| || ||||| |||||||| ||   | ||||||||||||| |||||||| | ||||    
T  5565238 aagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagaataatgactgataggttctctagt 5565337  T
Q  213 tttgatagggaagaatc 229  Q
    ||||| |||||||||||    
T  5565338 tttgaaagggaagaatc 5565354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 229
Target Start/End: Original strand, 5858453 - 5858618
Alignment:
Q  64 caatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttggaaattggcaaatgtttctggaacggg 163  Q
    |||| ||||||||||| |||||||||||||| | |||| ||||| ||| |||||| ||||| |||| |||||  ||||| ||||||||||| ||||| ||    
T  5858453 caatctgaaagatcttctgtggaaatgtaccggataatgcacaaaatgcaagactgagggtagtcaagtttttaaaatttgcaaatgtttcaggaactgg 5858552  T
Q  164 ggaagaaaaattgttcctatcaagaataatgaccgataggttttttagttttgatagggaagaatc 229  Q
    ||| ||||||| ||||  ||||||||||||||| |||||||| | |||||||| ||||||||||||    
T  5858553 ggatgaaaaatagttctcatcaagaataatgactgataggttctctagttttgttagggaagaatc 5858618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 5886210 - 5885974
Alignment:
Q  19 catggagattgttgttgtgtgctaagtcaataacggagagtttttcaatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgtaagact 118  Q
    |||||||||||  |||||  | |||||||||||  || ||| ||  |||||| ||||||||||||||||||||| |||| ||||| |||  |  |||| |    
T  5886210 catggagattggggttgtcagataagtcaataattgacagtgttctaatttggaagatcttttgtggaaatgtatctgtcaatccgcaattttgaagatt 5886111  T
Q  119 aagggtggtcaggttttggaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagttttgat 218  Q
     |||||||| |||||||  |||||||||||||||| ||| || ||||| ||||||||||||    |||||||||||||||||||||| | |||||||||     
T  5886110 gagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttctctagttttgaa 5886011  T
Q  219 agggaagaatctagtggccctgctagatcacagttat 255  Q
    ||||| ||||| || || |||| ||||  ||||||||    
T  5886010 agggaggaatcaaggggtcctgatagactacagttat 5885974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 5559347 - 5559535
Alignment:
Q  13 atgaaccatggagattgttgttgtgtgctaagtcaataacggagagtttttcaatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgt 112  Q
    |||||| ||||||||| |||||   || |||||||||||  || | | || ||||||| |||||||| |||||||||||| | || |||| ||||| ||     
T  5559347 atgaactatggagatttttgtttaatgttaagtcaataaatgacaatgttccaatttggaagatcttatgtggaaatgtatcagtcaatctacaagctgc 5559446  T
Q  113 aagactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgata 201  Q
    |||||||||||| ||||  |||  |||||||| ||||||||| || || ||||||||||||||||| | |||||||||||||| |||||    
T  5559447 aagactaagggttgtcaaatttctgaaattggaaaatgtttcaggcaccggggaagaaaaattgtttccatcaagaataatgatcgata 5559535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 3749358 - 3749529
Alignment:
Q  81 tgtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggggaagaaaaattgttcc 180  Q
    |||||||||||||| || ||| |||||   | |||||| |||||||||| |||||  ||||||||||||||||  || || || || |||||||||||||    
T  3749358 tgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcc 3749457  T
Q  181 tatcaagaataatgaccgataggttttttagttttgatagggaagaatctagtggccctgctagatcacagt 252  Q
     ||||||||||||||| |||||||| | |||| ||| |||||||||||| || || |||| || ||||||||    
T  3749458 catcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagt 3749529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 5605508 - 5605644
Alignment:
Q  65 aatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggg 164  Q
    ||||||||| || |||||||||||||| || || |||||||||    ||||| | |||||||| |||||||  |||||||||||||||||||| || |||    
T  5605508 aatttgaaatatattttgtggaaatgttccagtcaatccacaatcgttaagattgagggtggttaggtttttaaaattggcaaatgtttctggcactggg 5605607  T
Q  165 gaagaaaaattgttcctatcaagaataatgaccgata 201  Q
    || ||||||||||||| |||||||| |||||| ||||    
T  5605608 gatgaaaaattgttcccatcaagaagaatgacagata 5605644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 5895009 - 5894845
Alignment:
Q  65 aatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggg 164  Q
    |||||| |||||||||||||||||||||||  | ||||||||   |  |||| | |||||||| |||||||  |||||||||||||||||||| |  | |    
T  5895009 aatttggaagatcttttgtggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaaaattggcaaatgtttctggcaatgag 5894910  T
Q  165 gaagaaaaattgttcctatcaagaataatgaccgataggttttttagttttgatagggaagaatc 229  Q
    || ||||||||||| | || |||||||||||| || ||||| | |||| ||||||||||||||||    
T  5894909 gatgaaaaattgtttcgataaagaataatgactgacaggttctgtagtcttgatagggaagaatc 5894845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 5847949 - 5847764
Alignment:
Q  65 aatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggg 164  Q
    |||||| ||||| |||||||||||||||||  | ||||||||   |  |||| | |||||||| |||||||  |||||||||||||||| ||| || |||    
T  5847949 aatttggaagatattttgtggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggg 5847850  T
Q  165 gaagaaaaattgttcctatcaagaataatgaccgataggttttttagttttgatagggaagaatctagtggccctgctagatcaca 250  Q
    || ||||| ||||||  | |||||| ||||||||  ||||| | |||| ||| |||||||||||| || || |||| |||||||||    
T  5847849 gatgaaaagttgttctcaccaagaacaatgaccgtcaggttctctagtcttgttagggaagaatcaaggggtcctgatagatcaca 5847764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 5539043 - 5538940
Alignment:
Q  99 aatccacaagatgtaagactaagggtggtcaggttttggaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccg 198  Q
    |||||||| |||  |||||||||||| ||||  |||  |||||||| ||||||||| || || ||||||||||||||||| | ||| |||||||||| ||    
T  5539043 aatccacatgattcaagactaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcg 5538944  T
Q  199 atag 202  Q
    ||||    
T  5538943 atag 5538940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 1485695 - 1485808
Alignment:
Q  116 actaagggtggtcaggttttggaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagtttt 215  Q
    ||||||| ||||||||||||  ||||||| ||||||||||||||  || || |||| ||||||| |||||||||||||||  | |||||| | |||||||    
T  1485695 actaaggatggtcaggtttttaaaattggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagtttt 1485794  T
Q  216 gatagggaagaatc 229  Q
    || ||||| |||||    
T  1485795 gaaagggaggaatc 1485808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 876 - 990
Alignment:
Q  116 actaagggtggtcaggttttggaaatt-ggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagttt 214  Q
    ||||||| ||||||||||||  ||||| || ||||||||||||||  || || |||| ||||||| |||||||||||||||  | |||||| | ||||||    
T  876 actaaggatggtcaggtttttaaaattaggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttt 975  T
Q  215 tgatagggaagaatc 229  Q
    ||| ||||| |||||    
T  976 tgaaagggaggaatc 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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