View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11009_low_24 (Length: 258)
Name: NF11009_low_24
Description: NF11009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11009_low_24 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 11423929 - 11424175
Alignment:
| Q |
12 |
atgaatgcacgtgtcgctgattattgtcttcaccgacttatgactcaagctggtactattgagcagattcttgacgccggtgtcttaggttatcgcgcac |
111 |
Q |
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| T |
11423929 |
atgaatgcacgtgtcgctgattattgtcttcaccgacttatgactcaagctggtactattgagcagattcttgacgccggtgtcttaggttatcgcgcac |
11424028 |
T |
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| Q |
112 |
cagagttagctgcttccaagaagccaatgccttccttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgctgg |
211 |
Q |
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| T |
11424029 |
cagagttagctgcttccaagaagccaatgccttctttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgctgg |
11424128 |
T |
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| Q |
212 |
tgatgtgataactggtgaggagggaggtgttgatcttacagattggc |
258 |
Q |
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| T |
11424129 |
tgatgtgataactggtgaggagggaggtgttgatcttacagattggc |
11424175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 32304624 - 32304379
Alignment:
| Q |
12 |
atgaatgcacgtgtcgctgattattgtcttcaccgacttatgactcaagctggtactattgagcagattcttgacgccggtgtcttaggttatcgcgcac |
111 |
Q |
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| T |
32304624 |
atgaatgcatgtgttgttgattattgtcttcatcgacttatgactcaggcta-tactattgaacagattcttgatgcttgtgtcttaggttatcacgttc |
32304526 |
T |
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| Q |
112 |
cagagttagctgcttccaagaagccaatgccttccttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgctgg |
211 |
Q |
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| T |
32304525 |
cggagttaactgcttccaagaagacaatgccttccttcaagtcagatgtctttgttttcggtgtgatgctttttgaacttttaaccggaaggtgtgcttg |
32304426 |
T |
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| Q |
212 |
tgatgtgataactggtgaggagggaggtgttgatcttacagattggc |
258 |
Q |
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| T |
32304425 |
tgatgtgataactagtgaggagggaggtgttgatcttgcagattggc |
32304379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 9323177 - 9322946
Alignment:
| Q |
30 |
gattattgtcttcaccgacttatgactcaagctggtacta---ttgagcagattcttgacgccggtgtcttaggttatcgcgcaccagagttagctgctt |
126 |
Q |
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| T |
9323177 |
gattattgtcttgaccgacttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcgcacacgagttagctgctt |
9323078 |
T |
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| Q |
127 |
ccaagaagccaatgccttccttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgctggtgatgtgataactgg |
226 |
Q |
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| T |
9323077 |
caaagaagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtgatgtggtaactgg |
9322978 |
T |
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| Q |
227 |
tgaggagggaggtg-ttgatcttacagattgg |
257 |
Q |
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| T |
9322977 |
cgaggagggaggtgttttatcttacagattgg |
9322946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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